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The map label for this gene is intB [H]

Identifier: 114332452

GI number: 114332452

Start: 2633108

End: 2634373

Strand: Reverse

Name: intB [H]

Synonym: Neut_2505

Alternate gene names: 114332452

Gene position: 2634373-2633108 (Counterclockwise)

Preceding gene: 114332453

Following gene: 114332451

Centisome position: 99.0

GC content: 48.58

Gene sequence:

>1266_bases
ATGAAGCGCCATCTTTTGGCGGATGTAGCTATTCGCAATTCAAAACCTGATGATAAAACTCAGCGGTTATCTGACGGTGC
TGGCTTATACCTGTTAATCAAACCCAACAATTCTAAATGGTGGCGGTTTGACTACAGTATAGACGGCAAGCGTAAAACTC
TATCTTTGGGTGTTTACCCAACTGTTAGCCTGAAAGCAGCACGTGATAGGGCTGATGCAGCCCGCCAAGATGTTGTTAAT
GGCATAGACCCCAGTACCAGCCGCAAAGATCACAAAGCCAAACAAGCAACAGAAAGGGAAGCCGATAGGCGTATTGCTGA
AGGACTGCCTGCAATAGACTCATTTGAAGATGTTGCCCGTGAATGGTTCAGCAAGTTTTCAACTGAGTGGGCACCGTCTC
ATGCAGACAAGATTATCCGTCGGCTGGAGCGTGATATTTTCCCTTGGATCGGCAAACAACATATAACAGATGTTAATGCA
CCTGCGTTGCTGAGCGTATTAGGCAGGATTGAATCACGTGGTGCAAAAGAGACAGCACACAGAGCCTTACAAAATTGTGG
GCAAATATTCCGCTACGCAGTAGCCACAGGTCGTGTCGAACTAAACCCCGCTCCTTCATTACGCGACTTTCTCCCCTCCC
CCAAACCAGCACACCACGCAGCCATCATTGAGCCGCAAGCGGTTGGTGAGTTACTGCGAGCCATAGACAGTTATCAAGGT
TATTTTGTGACTAAGTGCGCGTTACGTATAGCGCCTTATGTTTTTGTTCGTCCGGGTGAGTTGCGTAACGCTGAATGGGT
TGAGATTAACCTTGATCAAGCTGAATGGGATATACCTGCTGAGCGGATGAAGATGCGTGAGCCTCATCTTGTGCCTCTGG
CCACCCAGGTTGTAGAGATATTACGTGAGTTATATGCACTTACCGGGAGTGGTCGTTTTGTGTTTCCGGGTGCTCGTACC
ACTAGCCGCCCAATGAGTAATAACGCGGTTCTGGCAGCACTGCGGCGGATGGGGTTTGGTAAGGATGAAATGACCGGCCA
CGGGTTCCGTGCAATGGCTCGGACTATTCTTGATCAAGAGTTACATGTTCGCCCTGACTTTATTGAACACCAGTTAGCCC
ATGCTGTGCGTGATGCAAACGGACGGGCTTATAACAGAACTACGCACTTACCGGAGCGTAAACAAATGATGCAGGATTGG
GCGGATTATCTGGATAAGTTAAAAACTGGTGCTGAGATTATTGCACTACCCAGGAGGATGGCCTAA

Upstream 100 bases:

>100_bases
AACAAGCAGTAGAATCCAGTATAATATGCAGTAACTTTTACAGTAACCGCCGGGGTTACTGCTTTTTCGTAGAAAGTTAC
TGCATTGTTCTGGAGGCAGC

Downstream 100 bases:

>100_bases
TGCCACGTAAAAAGACTGTCCAGCCTAAACCGCTGGCCATAATCAAATGGCTGGAACCAGATCCATCGTGGGGGATGGGG
TATGTGCCCCATATATATGA

Product: phage integrase family protein

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MKRHLLADVAIRNSKPDDKTQRLSDGAGLYLLIKPNNSKWWRFDYSIDGKRKTLSLGVYPTVSLKAARDRADAARQDVVN
GIDPSTSRKDHKAKQATEREADRRIAEGLPAIDSFEDVAREWFSKFSTEWAPSHADKIIRRLERDIFPWIGKQHITDVNA
PALLSVLGRIESRGAKETAHRALQNCGQIFRYAVATGRVELNPAPSLRDFLPSPKPAHHAAIIEPQAVGELLRAIDSYQG
YFVTKCALRIAPYVFVRPGELRNAEWVEINLDQAEWDIPAERMKMREPHLVPLATQVVEILRELYALTGSGRFVFPGART
TSRPMSNNAVLAALRRMGFGKDEMTGHGFRAMARTILDQELHVRPDFIEHQLAHAVRDANGRAYNRTTHLPERKQMMQDW
ADYLDKLKTGAEIIALPRRMA

Sequences:

>Translated_421_residues
MKRHLLADVAIRNSKPDDKTQRLSDGAGLYLLIKPNNSKWWRFDYSIDGKRKTLSLGVYPTVSLKAARDRADAARQDVVN
GIDPSTSRKDHKAKQATEREADRRIAEGLPAIDSFEDVAREWFSKFSTEWAPSHADKIIRRLERDIFPWIGKQHITDVNA
PALLSVLGRIESRGAKETAHRALQNCGQIFRYAVATGRVELNPAPSLRDFLPSPKPAHHAAIIEPQAVGELLRAIDSYQG
YFVTKCALRIAPYVFVRPGELRNAEWVEINLDQAEWDIPAERMKMREPHLVPLATQVVEILRELYALTGSGRFVFPGART
TSRPMSNNAVLAALRRMGFGKDEMTGHGFRAMARTILDQELHVRPDFIEHQLAHAVRDANGRAYNRTTHLPERKQMMQDW
ADYLDKLKTGAEIIALPRRMA
>Mature_421_residues
MKRHLLADVAIRNSKPDDKTQRLSDGAGLYLLIKPNNSKWWRFDYSIDGKRKTLSLGVYPTVSLKAARDRADAARQDVVN
GIDPSTSRKDHKAKQATEREADRRIAEGLPAIDSFEDVAREWFSKFSTEWAPSHADKIIRRLERDIFPWIGKQHITDVNA
PALLSVLGRIESRGAKETAHRALQNCGQIFRYAVATGRVELNPAPSLRDFLPSPKPAHHAAIIEPQAVGELLRAIDSYQG
YFVTKCALRIAPYVFVRPGELRNAEWVEINLDQAEWDIPAERMKMREPHLVPLATQVVEILRELYALTGSGRFVFPGART
TSRPMSNNAVLAALRRMGFGKDEMTGHGFRAMARTILDQELHVRPDFIEHQLAHAVRDANGRAYNRTTHLPERKQMMQDW
ADYLDKLKTGAEIIALPRRMA

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=412, Percent_Identity=36.6504854368932, Blast_Score=252, Evalue=4e-68,
Organism=Escherichia coli, GI1788690, Length=404, Percent_Identity=36.1386138613861, Blast_Score=247, Evalue=1e-66,
Organism=Escherichia coli, GI1788974, Length=411, Percent_Identity=33.8199513381995, Blast_Score=228, Evalue=5e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47708; Mature: 47708

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRHLLADVAIRNSKPDDKTQRLSDGAGLYLLIKPNNSKWWRFDYSIDGKRKTLSLGVYP
CCCHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEECCCC
TVSLKAARDRADAARQDVVNGIDPSTSRKDHKAKQATEREADRRIAEGLPAIDSFEDVAR
CEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
EWFSKFSTEWAPSHADKIIRRLERDIFPWIGKQHITDVNAPALLSVLGRIESRGAKETAH
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHCCCHHHHH
RALQNCGQIFRYAVATGRVELNPAPSLRDFLPSPKPAHHAAIIEPQAVGELLRAIDSYQG
HHHHHHHHHHHHHHHHCEEEECCCCCHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCC
YFVTKCALRIAPYVFVRPGELRNAEWVEINLDQAEWDIPAERMKMREPHLVPLATQVVEI
HHHHHHHHHHCCEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHH
LRELYALTGSGRFVFPGARTTSRPMSNNAVLAALRRMGFGKDEMTGHGFRAMARTILDQE
HHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
LHVRPDFIEHQLAHAVRDANGRAYNRTTHLPERKQMMQDWADYLDKLKTGAEIIALPRRM
HCCCCHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCC
A
C
>Mature Secondary Structure
MKRHLLADVAIRNSKPDDKTQRLSDGAGLYLLIKPNNSKWWRFDYSIDGKRKTLSLGVYP
CCCHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEECCCC
TVSLKAARDRADAARQDVVNGIDPSTSRKDHKAKQATEREADRRIAEGLPAIDSFEDVAR
CEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
EWFSKFSTEWAPSHADKIIRRLERDIFPWIGKQHITDVNAPALLSVLGRIESRGAKETAH
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHCCCHHHHH
RALQNCGQIFRYAVATGRVELNPAPSLRDFLPSPKPAHHAAIIEPQAVGELLRAIDSYQG
HHHHHHHHHHHHHHHHCEEEECCCCCHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCC
YFVTKCALRIAPYVFVRPGELRNAEWVEINLDQAEWDIPAERMKMREPHLVPLATQVVEI
HHHHHHHHHHCCEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHH
LRELYALTGSGRFVFPGARTTSRPMSNNAVLAALRRMGFGKDEMTGHGFRAMARTILDQE
HHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
LHVRPDFIEHQLAHAVRDANGRAYNRTTHLPERKQMMQDWADYLDKLKTGAEIIALPRRM
HCCCCHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]