Click here to switch to the map view.

The map label for this gene is yliD [C]

Identifier: 114332392

GI number: 114332392

Start: 2554129

End: 2555622

Strand: Direct

Name: yliD [C]

Synonym: Neut_2440

Alternate gene names: 114332392

Gene position: 2554129-2555622 (Clockwise)

Preceding gene: 114332382

Following gene: 114332393

Centisome position: 95.98

GC content: 50.74

Gene sequence:

>1494_bases
ATGCCTTTCCATCCCGTTATACTCTGGACAGACGCTCTGATTTATCTGCTGCTGGCAACAGGTATTATTCTTGGTATTTA
TGCCAGGCGGCATGAACATATGCTGGCTTCCTGGCGCAAGGTTATACACAGCGCCAGCGGAATGTCTGCACTGACCATCC
TGTTATGCTTCATCCTGATCGGTTTGCTCGACACGATTCACTTTCGCCCGGCACTGGAACAAACTCGCGCCACCGGGGAA
AATATCTATAGCGCTGAAGTACTCAGCGTGTTCGATCTGTTGGCTACTCCGCTACGCTCACAGATGGAAAAAACCTACTC
CGCCCCCCTATCTGCCCATCTATATGCAAAGCAGATGATTATCACCACTGAAGGAGAGCAGGTATGGGATTTTGCCCGAT
TAACCTTCGGCGGCGCGCATTTGGATGATCCAAGAACGGAGCTGACCAGTGATATTTGGTGGCGATCCGTTTCGGGAGCG
GGAGCAGGATTGCTAATCTGGGCCGGGTTGGTTCTCGGCCTGGGCAGTATGCAGGCCAAGCAGTATCGCACTTCATTTTT
TCGTATACAAACAGCTATATGGCACGGTACAACTGAAGTTCCCTGGTGCGCCATATTGATCACGCTGGCTGTTATTCTGG
CCATGGGGGGCGCCGTCGCAGCACTGACCACACACTACCATGTCCTGGGAACAGACAAGGTAGGCCAGGATGTTTTGTAC
CTGTCACTCAAAAGTATTCGCACCGGGCTTGTTATCGGAACATTGACAACCTTGATCATGCTGCCATTCGCCCTGCTGCT
GGGGATTGCAGCAGGTTACTTTCGCGGCTGGGTTGATGATGTTATCCAGTACGTGTACACCACGCTCAGCTCTATCCCCA
GTGTATTGCTGATTGCAGCAGCCGTGCTGATGATGCAGGTTTATATTGAAACGCATGCCGATCTGCTTGATACAACCGCC
GCACGTGCTGATCTGCGTTTGCTGTTTCTTTGTATTATTCTGGGCATCACCAGCTGGACGGGGCTGTGCAGAGTATTGCG
CGGAGAGACACTGAAACTGCGTGAAATGGAATACATCCAGGCAGCACATGCGTTTGGCGTTTCTCATTGGCGCATCATCA
CTCGCCATATTTTGCCGAATGTCATCCATATCGTACTGATTACCACCGTAATGGATTTCAGCAGCCTGGTACTGGCCGAA
GCTGTTCTTTCCTATGTCGGAGTGGGTGTGGATCCCTCTACCATCAGCTTTGGAACGATGATCAATGCCTCCAGGCTGGA
AATGGCGCGTGAACCGATGGTCTGGTGGACATTATTTGCAGCATTCACCTTCATGTTCGCGCTGGTATTAAGCGCCAATC
TTTTTTCAGATGCGGTACAAAATGCATTCAATCCGCACAGCCGAACCCTCAGCAATGATTCAGCCAGATATCTCAAGAAT
CAGAATGAAACAGAAGAAATGGCCTCCCCAGACAAAAACATACCCCGCACATGA

Upstream 100 bases:

>100_bases
TTTATCATTACGATATCCACTTTTTTCTTCGATGCAATTGCCTGTTGTCACTACGCTACAATACCGCATTATTACAACTT
GAACTTTGATCTTCGTCATA

Downstream 100 bases:

>100_bases
CCGCATTACTTGAAATAAATGAGCTCAAAGTGCAGCTGCATACCGGCCGGCAGCCGGTACGTGCCGTGGATGGATTATCA
CTTGCCATTCGGCCAGGCGA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 497; Mature: 496

Protein sequence:

>497_residues
MPFHPVILWTDALIYLLLATGIILGIYARRHEHMLASWRKVIHSASGMSALTILLCFILIGLLDTIHFRPALEQTRATGE
NIYSAEVLSVFDLLATPLRSQMEKTYSAPLSAHLYAKQMIITTEGEQVWDFARLTFGGAHLDDPRTELTSDIWWRSVSGA
GAGLLIWAGLVLGLGSMQAKQYRTSFFRIQTAIWHGTTEVPWCAILITLAVILAMGGAVAALTTHYHVLGTDKVGQDVLY
LSLKSIRTGLVIGTLTTLIMLPFALLLGIAAGYFRGWVDDVIQYVYTTLSSIPSVLLIAAAVLMMQVYIETHADLLDTTA
ARADLRLLFLCIILGITSWTGLCRVLRGETLKLREMEYIQAAHAFGVSHWRIITRHILPNVIHIVLITTVMDFSSLVLAE
AVLSYVGVGVDPSTISFGTMINASRLEMAREPMVWWTLFAAFTFMFALVLSANLFSDAVQNAFNPHSRTLSNDSARYLKN
QNETEEMASPDKNIPRT

Sequences:

>Translated_497_residues
MPFHPVILWTDALIYLLLATGIILGIYARRHEHMLASWRKVIHSASGMSALTILLCFILIGLLDTIHFRPALEQTRATGE
NIYSAEVLSVFDLLATPLRSQMEKTYSAPLSAHLYAKQMIITTEGEQVWDFARLTFGGAHLDDPRTELTSDIWWRSVSGA
GAGLLIWAGLVLGLGSMQAKQYRTSFFRIQTAIWHGTTEVPWCAILITLAVILAMGGAVAALTTHYHVLGTDKVGQDVLY
LSLKSIRTGLVIGTLTTLIMLPFALLLGIAAGYFRGWVDDVIQYVYTTLSSIPSVLLIAAAVLMMQVYIETHADLLDTTA
ARADLRLLFLCIILGITSWTGLCRVLRGETLKLREMEYIQAAHAFGVSHWRIITRHILPNVIHIVLITTVMDFSSLVLAE
AVLSYVGVGVDPSTISFGTMINASRLEMAREPMVWWTLFAAFTFMFALVLSANLFSDAVQNAFNPHSRTLSNDSARYLKN
QNETEEMASPDKNIPRT
>Mature_496_residues
PFHPVILWTDALIYLLLATGIILGIYARRHEHMLASWRKVIHSASGMSALTILLCFILIGLLDTIHFRPALEQTRATGEN
IYSAEVLSVFDLLATPLRSQMEKTYSAPLSAHLYAKQMIITTEGEQVWDFARLTFGGAHLDDPRTELTSDIWWRSVSGAG
AGLLIWAGLVLGLGSMQAKQYRTSFFRIQTAIWHGTTEVPWCAILITLAVILAMGGAVAALTTHYHVLGTDKVGQDVLYL
SLKSIRTGLVIGTLTTLIMLPFALLLGIAAGYFRGWVDDVIQYVYTTLSSIPSVLLIAAAVLMMQVYIETHADLLDTTAA
RADLRLLFLCIILGITSWTGLCRVLRGETLKLREMEYIQAAHAFGVSHWRIITRHILPNVIHIVLITTVMDFSSLVLAEA
VLSYVGVGVDPSTISFGTMINASRLEMAREPMVWWTLFAAFTFMFALVLSANLFSDAVQNAFNPHSRTLSNDSARYLKNQ
NETEEMASPDKNIPRT

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Yliabcd; Probably Responsible For The Translocation Of The Substrate Across The Membrane. [C]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=242, Percent_Identity=28.5123966942149, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787760, Length=248, Percent_Identity=30.241935483871, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1787498, Length=242, Percent_Identity=28.5123966942149, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI1788505, Length=244, Percent_Identity=27.8688524590164, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1789889, Length=240, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1789964, Length=242, Percent_Identity=26.0330578512397, Blast_Score=75, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 55076; Mature: 54945

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFHPVILWTDALIYLLLATGIILGIYARRHEHMLASWRKVIHSASGMSALTILLCFILI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GLLDTIHFRPALEQTRATGENIYSAEVLSVFDLLATPLRSQMEKTYSAPLSAHLYAKQMI
HHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEE
ITTEGEQVWDFARLTFGGAHLDDPRTELTSDIWWRSVSGAGAGLLIWAGLVLGLGSMQAK
EECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHH
QYRTSFFRIQTAIWHGTTEVPWCAILITLAVILAMGGAVAALTTHYHVLGTDKVGQDVLY
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHEEEECCCCCHHHHH
LSLKSIRTGLVIGTLTTLIMLPFALLLGIAAGYFRGWVDDVIQYVYTTLSSIPSVLLIAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVLMMQVYIETHADLLDTTAARADLRLLFLCIILGITSWTGLCRVLRGETLKLREMEYIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
AAHAFGVSHWRIITRHILPNVIHIVLITTVMDFSSLVLAEAVLSYVGVGVDPSTISFGTM
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHH
INASRLEMAREPMVWWTLFAAFTFMFALVLSANLFSDAVQNAFNPHSRTLSNDSARYLKN
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC
QNETEEMASPDKNIPRT
CCCHHHHCCCCCCCCCC
>Mature Secondary Structure 
PFHPVILWTDALIYLLLATGIILGIYARRHEHMLASWRKVIHSASGMSALTILLCFILI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GLLDTIHFRPALEQTRATGENIYSAEVLSVFDLLATPLRSQMEKTYSAPLSAHLYAKQMI
HHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEE
ITTEGEQVWDFARLTFGGAHLDDPRTELTSDIWWRSVSGAGAGLLIWAGLVLGLGSMQAK
EECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHH
QYRTSFFRIQTAIWHGTTEVPWCAILITLAVILAMGGAVAALTTHYHVLGTDKVGQDVLY
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHEEEECCCCCHHHHH
LSLKSIRTGLVIGTLTTLIMLPFALLLGIAAGYFRGWVDDVIQYVYTTLSSIPSVLLIAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVLMMQVYIETHADLLDTTAARADLRLLFLCIILGITSWTGLCRVLRGETLKLREMEYIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
AAHAFGVSHWRIITRHILPNVIHIVLITTVMDFSSLVLAEAVLSYVGVGVDPSTISFGTM
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHH
INASRLEMAREPMVWWTLFAAFTFMFALVLSANLFSDAVQNAFNPHSRTLSNDSARYLKN
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC
QNETEEMASPDKNIPRT
CCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]