Click here to switch to the map view.

The map label for this gene is priB [H]

Identifier: 114332338

GI number: 114332338

Start: 2497204

End: 2497512

Strand: Reverse

Name: priB [H]

Synonym: Neut_2381

Alternate gene names: 114332338

Gene position: 2497512-2497204 (Counterclockwise)

Preceding gene: 114332339

Following gene: 114332337

Centisome position: 93.85

GC content: 45.31

Gene sequence:

>309_bases
ATGAGGTTTCCACCGAACCTGAATCAGGTGATTATCGGTGGAAAGATTGTTGATCTGAATACACCTCGCTATACGCCTGT
CGGTATTATGATTGCCGAGTTTAGACTGAGCCATGTTTCCAGCCAGGAGGAAGTTGGCATCCAGCGCAAGATTGAATTTG
AACTTGCGGCAATCGCCATGGCAGACATGGCTGAAAAAATTGTTCGCATGGGACCTGGCAGTCATGTCGAACTTACCGGC
TTCATGACAAAAAAAAACCGCTTAAGTAACCAGCTTGTTTTGCATGTTAGTGATGCCAGAATTATCTGA

Upstream 100 bases:

>100_bases
AATAGCAGGGGCACTGCGGCTCCCACAGTGAACGTAGCCGATGATTCGGCTAGTGGCGCACAAGTAGTAGCAGCTGAGGA
AAACGATACCCAATCCTGAT

Downstream 100 bases:

>100_bases
AAATAAATACCAAATATAGACGCTCTTAATGGAGAAATAATATGAGATTTTCAAGAAACAAAGATGCAAAGAACAAGATG
AAGGACCGGATGGCAAATCG

Product: primosomal replication protein N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MRFPPNLNQVIIGGKIVDLNTPRYTPVGIMIAEFRLSHVSSQEEVGIQRKIEFELAAIAMADMAEKIVRMGPGSHVELTG
FMTKKNRLSNQLVLHVSDARII

Sequences:

>Translated_102_residues
MRFPPNLNQVIIGGKIVDLNTPRYTPVGIMIAEFRLSHVSSQEEVGIQRKIEFELAAIAMADMAEKIVRMGPGSHVELTG
FMTKKNRLSNQLVLHVSDARII
>Mature_102_residues
MRFPPNLNQVIIGGKIVDLNTPRYTPVGIMIAEFRLSHVSSQEEVGIQRKIEFELAAIAMADMAEKIVRMGPGSHVELTG
FMTKKNRLSNQLVLHVSDARII

Specific function: Binds single-stranded DNA at the primosome assembly site (PAS) [H]

COG id: COG2965

COG function: function code L; Primosomal replication protein N

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11387; Mature: 11387

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFPPNLNQVIIGGKIVDLNTPRYTPVGIMIAEFRLSHVSSQEEVGIQRKIEFELAAIAM
CCCCCCCCEEEECCEEEECCCCCCCCCEEEEEEEHHHHCCCCCCCCCEEEEEHHHHHHHH
ADMAEKIVRMGPGSHVELTGFMTKKNRLSNQLVLHVSDARII
HHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MRFPPNLNQVIIGGKIVDLNTPRYTPVGIMIAEFRLSHVSSQEEVGIQRKIEFELAAIAM
CCCCCCCCEEEECCEEEECCCCCCCCCEEEEEEEHHHHCCCCCCCCCEEEEEHHHHHHHH
ADMAEKIVRMGPGSHVELTGFMTKKNRLSNQLVLHVSDARII
HHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12700255 [H]