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The map label for this gene is ybbK [C]

Identifier: 114332325

GI number: 114332325

Start: 2484793

End: 2485572

Strand: Reverse

Name: ybbK [C]

Synonym: Neut_2368

Alternate gene names: 114332325

Gene position: 2485572-2484793 (Counterclockwise)

Preceding gene: 114332326

Following gene: 114332321

Centisome position: 93.41

GC content: 47.82

Gene sequence:

>780_bases
ATGCACACGGATATCGTATCAGTTATTACGCCAATACTGATTTTTTCCATCTTTTTTCTGGCCAGTGCGCTTAAGGTATT
GAAAGAATACGAGCGCGGGGTCGTGTTCATGCTGGGGCGTTTTTGGCGAGTCAAAGGGCCGGGTCTCATCGTTGTCATTC
CAGTTATACAAACTATGGTGCGGGTTGATCTACGCACAATTGTGATGGATGTGCCCGCTCAGGATGTTATTTCGCGTGAC
AATGTTTCGGTAAAAGTAAATGCCGTGCTGTATTTTCGTGTGGTTGATCCGGAAAAAGCCATTATTCAGGTTGAGGATTA
CAATATGGCGACCAGTCAGCTGGCACAGACAACATTACGCTCCGTGCTGGGACAACATGAGCTGGATGAAATGCTGGCCA
GTCGCGACAAGCTCAATACGGATATCCAGTTGATTCTGGATGGGCAGACTGAAGCGTGGGGTATCAAGGTATCGAATGTC
GAGCTCAAGCACGTTGATCTCAATGAAACAATGGTTCGGGCAATTGCAAGACAGGCCGAGGCCGAACGGGAGCGCCGTGC
CAAAATCATTCATGCAGAAGGAGAATTGCAGGCATCACGCCATTTGCTTGAGGCCTCGCAAATTCTGGCGAAGCAGCCTC
AAGCTTTGCAACTGCGCTATCTGCAAACGCTGACAGAAATAGCAGGAGAGAAAAGTTCTACGATTGTTTTTCCGCTACCG
ATAGAGTTGTTGGCTGTTTTGCAAAAAATGTCAGAGAGAACATCTGTCAGTGACGATTAG

Upstream 100 bases:

>100_bases
AAACCTGGACAGCAGGTCAGTGTAATAGCCATACATGGATTGATGCTTGAAGTGGAGCCTTACCAACCTGATCTTACAAT
CAACACAACGGAGGATTGAT

Downstream 100 bases:

>100_bases
ATTAACTAATCAAACGATGGATGATGATTAGCGATTCATCATTGGATGTACGCCGGCTTTGATCGCACGGATTGCTTCTT
CAGGAGAACCCACCACTAAA

Product: band 7 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MHTDIVSVITPILIFSIFFLASALKVLKEYERGVVFMLGRFWRVKGPGLIVVIPVIQTMVRVDLRTIVMDVPAQDVISRD
NVSVKVNAVLYFRVVDPEKAIIQVEDYNMATSQLAQTTLRSVLGQHELDEMLASRDKLNTDIQLILDGQTEAWGIKVSNV
ELKHVDLNETMVRAIARQAEAERERRAKIIHAEGELQASRHLLEASQILAKQPQALQLRYLQTLTEIAGEKSSTIVFPLP
IELLAVLQKMSERTSVSDD

Sequences:

>Translated_259_residues
MHTDIVSVITPILIFSIFFLASALKVLKEYERGVVFMLGRFWRVKGPGLIVVIPVIQTMVRVDLRTIVMDVPAQDVISRD
NVSVKVNAVLYFRVVDPEKAIIQVEDYNMATSQLAQTTLRSVLGQHELDEMLASRDKLNTDIQLILDGQTEAWGIKVSNV
ELKHVDLNETMVRAIARQAEAERERRAKIIHAEGELQASRHLLEASQILAKQPQALQLRYLQTLTEIAGEKSSTIVFPLP
IELLAVLQKMSERTSVSDD
>Mature_259_residues
MHTDIVSVITPILIFSIFFLASALKVLKEYERGVVFMLGRFWRVKGPGLIVVIPVIQTMVRVDLRTIVMDVPAQDVISRD
NVSVKVNAVLYFRVVDPEKAIIQVEDYNMATSQLAQTTLRSVLGQHELDEMLASRDKLNTDIQLILDGQTEAWGIKVSNV
ELKHVDLNETMVRAIARQAEAERERRAKIIHAEGELQASRHLLEASQILAKQPQALQLRYLQTLTEIAGEKSSTIVFPLP
IELLAVLQKMSERTSVSDD

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI21686995, Length=224, Percent_Identity=50.8928571428571, Blast_Score=214, Evalue=9e-56,
Organism=Homo sapiens, GI221316744, Length=224, Percent_Identity=50.8928571428571, Blast_Score=213, Evalue=1e-55,
Organism=Homo sapiens, GI38016911, Length=224, Percent_Identity=49.5535714285714, Blast_Score=207, Evalue=6e-54,
Organism=Homo sapiens, GI7657615, Length=245, Percent_Identity=37.5510204081633, Blast_Score=159, Evalue=2e-39,
Organism=Homo sapiens, GI7305503, Length=183, Percent_Identity=37.7049180327869, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI20149563, Length=160, Percent_Identity=34.375, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI38016907, Length=57, Percent_Identity=68.4210526315789, Blast_Score=81, Evalue=8e-16,
Organism=Escherichia coli, GI1786697, Length=193, Percent_Identity=35.7512953367876, Blast_Score=133, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17569493, Length=243, Percent_Identity=48.559670781893, Blast_Score=224, Evalue=3e-59,
Organism=Caenorhabditis elegans, GI193209764, Length=242, Percent_Identity=48.7603305785124, Blast_Score=223, Evalue=6e-59,
Organism=Caenorhabditis elegans, GI25153583, Length=250, Percent_Identity=48, Blast_Score=209, Evalue=8e-55,
Organism=Caenorhabditis elegans, GI17569497, Length=231, Percent_Identity=45.021645021645, Blast_Score=209, Evalue=9e-55,
Organism=Caenorhabditis elegans, GI71987612, Length=250, Percent_Identity=48, Blast_Score=209, Evalue=1e-54,
Organism=Caenorhabditis elegans, GI71987621, Length=254, Percent_Identity=47.244094488189, Blast_Score=209, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI17569499, Length=235, Percent_Identity=48.936170212766, Blast_Score=207, Evalue=6e-54,
Organism=Caenorhabditis elegans, GI17570161, Length=240, Percent_Identity=47.0833333333333, Blast_Score=200, Evalue=8e-52,
Organism=Caenorhabditis elegans, GI193210507, Length=240, Percent_Identity=47.0833333333333, Blast_Score=199, Evalue=8e-52,
Organism=Caenorhabditis elegans, GI17570459, Length=258, Percent_Identity=44.5736434108527, Blast_Score=197, Evalue=5e-51,
Organism=Caenorhabditis elegans, GI71989948, Length=231, Percent_Identity=47.1861471861472, Blast_Score=189, Evalue=9e-49,
Organism=Caenorhabditis elegans, GI32566490, Length=218, Percent_Identity=48.1651376146789, Blast_Score=182, Evalue=1e-46,
Organism=Caenorhabditis elegans, GI71989955, Length=187, Percent_Identity=47.5935828877005, Blast_Score=149, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI71989963, Length=126, Percent_Identity=50, Blast_Score=124, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI32564147, Length=189, Percent_Identity=35.978835978836, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17542664, Length=168, Percent_Identity=27.9761904761905, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI45556022, Length=242, Percent_Identity=50.8264462809917, Blast_Score=222, Evalue=2e-58,
Organism=Drosophila melanogaster, GI18860517, Length=241, Percent_Identity=48.5477178423236, Blast_Score=214, Evalue=5e-56,
Organism=Drosophila melanogaster, GI62484448, Length=252, Percent_Identity=48.8095238095238, Blast_Score=210, Evalue=6e-55,
Organism=Drosophila melanogaster, GI24657857, Length=252, Percent_Identity=48.8095238095238, Blast_Score=210, Evalue=6e-55,
Organism=Drosophila melanogaster, GI62484274, Length=252, Percent_Identity=48.8095238095238, Blast_Score=210, Evalue=9e-55,
Organism=Drosophila melanogaster, GI281365664, Length=252, Percent_Identity=48.8095238095238, Blast_Score=210, Evalue=9e-55,
Organism=Drosophila melanogaster, GI21356845, Length=234, Percent_Identity=41.4529914529915, Blast_Score=195, Evalue=3e-50,
Organism=Drosophila melanogaster, GI281361631, Length=234, Percent_Identity=41.025641025641, Blast_Score=191, Evalue=4e-49,
Organism=Drosophila melanogaster, GI281361633, Length=234, Percent_Identity=41.025641025641, Blast_Score=191, Evalue=4e-49,
Organism=Drosophila melanogaster, GI28573263, Length=241, Percent_Identity=41.0788381742739, Blast_Score=186, Evalue=1e-47,
Organism=Drosophila melanogaster, GI281361635, Length=181, Percent_Identity=43.0939226519337, Blast_Score=153, Evalue=1e-37,
Organism=Drosophila melanogaster, GI45550506, Length=209, Percent_Identity=37.3205741626794, Blast_Score=131, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 29152; Mature: 29152

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTDIVSVITPILIFSIFFLASALKVLKEYERGVVFMLGRFWRVKGPGLIVVIPVIQTMV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHEEECCCCEEEEHHHHHHHH
RVDLRTIVMDVPAQDVISRDNVSVKVNAVLYFRVVDPEKAIIQVEDYNMATSQLAQTTLR
HHHHHHHHHCCCHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHHH
SVLGQHELDEMLASRDKLNTDIQLILDGQTEAWGIKVSNVELKHVDLNETMVRAIARQAE
HHHCHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEECEEEEEECCHHHHHHHHHHHHH
AERERRAKIIHAEGELQASRHLLEASQILAKQPQALQLRYLQTLTEIAGEKSSTIVFPLP
HHHHHHHEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECC
IELLAVLQKMSERTSVSDD
HHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MHTDIVSVITPILIFSIFFLASALKVLKEYERGVVFMLGRFWRVKGPGLIVVIPVIQTMV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHEEECCCCEEEEHHHHHHHH
RVDLRTIVMDVPAQDVISRDNVSVKVNAVLYFRVVDPEKAIIQVEDYNMATSQLAQTTLR
HHHHHHHHHCCCHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHHH
SVLGQHELDEMLASRDKLNTDIQLILDGQTEAWGIKVSNVELKHVDLNETMVRAIARQAE
HHHCHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEECEEEEEECCHHHHHHHHHHHHH
AERERRAKIIHAEGELQASRHLLEASQILAKQPQALQLRYLQTLTEIAGEKSSTIVFPLP
HHHHHHHEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECC
IELLAVLQKMSERTSVSDD
HHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]