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The map label for this gene is yggS [C]

Identifier: 114332299

GI number: 114332299

Start: 2466280

End: 2466996

Strand: Direct

Name: yggS [C]

Synonym: Neut_2339

Alternate gene names: 114332299

Gene position: 2466280-2466996 (Clockwise)

Preceding gene: 114332296

Following gene: 114332310

Centisome position: 92.68

GC content: 48.54

Gene sequence:

>717_bases
ATGACTACAATTGCCTCACGCCTGCAGAATGTTAAGAACCGTATTATTGATGCCGCTAAAAATGTGGGGCGCGACCCGGC
AACTATTCAGTTACTGGCAGCCAGTAAAACCAATACACCGGATAAGTTGAGAGAAGCCTGGGAAGCGGGACAAACCGTGT
TTGGAGAAAATTATCTGCAAGAAGGTCTGGTTAAAATTCGTGCATTAGCCGATTTACCAATCGAATGGCACTTTATCGGC
CCAATTCAAAGCAACAAAACCAAACTGATTGCCGAGAATTTTTCCTGGGTACATGGCATTGACCGGGAAAAAATCGCAAC
TCGTCTTTCAGCAGCAAGACCGGAATCATTACCTCCCCTGCAAGTCTGCGTGCAAGTCAATGTAAGTGGAGAAATTACTA
AAAGTGGAGTAGATCCGGAAAAAGCCGCAGAACTGGCAGCCTTTGTCAGTGAGCAGCCGCGACTTCAACTGCGCGGAATC
ATGGCCGTGCCGGAACTGACTGCTGTCACTGCGCTGCAACGCGAACAATTTCAGATGATGCGAGAAGTTTACGAGCAACT
CAAACAGAAAGGCTTTATCCTGGATACGCTATCAATGGGCATGTCAGAAGATCTGGAGAACGCCATTGCGGAAGGGGCCA
CAATGGTCAGAATAGGCACAGCAATTTTTGGTCAACGACGTTACGCTATCCCTGAGGAGCTCGGTTCGCGCCCGTAG

Upstream 100 bases:

>100_bases
GGATCAAACCGCACGGAATTAAATATATTTCGGGAACATCAGCCAAACTTTCCCTGTAATATCCATCGTATTTGTCAACT
CATTTAGATCACTATTCGCC

Downstream 100 bases:

>100_bases
TCAGAAAACGATACTTCTCTATCAGCTGCTCATGATCCTCAACCCGGTTCGGATCAACAATAATGCAGCTGACCGGACAA
ACTTCCACACACTGCGGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MTTIASRLQNVKNRIIDAAKNVGRDPATIQLLAASKTNTPDKLREAWEAGQTVFGENYLQEGLVKIRALADLPIEWHFIG
PIQSNKTKLIAENFSWVHGIDREKIATRLSAARPESLPPLQVCVQVNVSGEITKSGVDPEKAAELAAFVSEQPRLQLRGI
MAVPELTAVTALQREQFQMMREVYEQLKQKGFILDTLSMGMSEDLENAIAEGATMVRIGTAIFGQRRYAIPEELGSRP

Sequences:

>Translated_238_residues
MTTIASRLQNVKNRIIDAAKNVGRDPATIQLLAASKTNTPDKLREAWEAGQTVFGENYLQEGLVKIRALADLPIEWHFIG
PIQSNKTKLIAENFSWVHGIDREKIATRLSAARPESLPPLQVCVQVNVSGEITKSGVDPEKAAELAAFVSEQPRLQLRGI
MAVPELTAVTALQREQFQMMREVYEQLKQKGFILDTLSMGMSEDLENAIAEGATMVRIGTAIFGQRRYAIPEELGSRP
>Mature_237_residues
TTIASRLQNVKNRIIDAAKNVGRDPATIQLLAASKTNTPDKLREAWEAGQTVFGENYLQEGLVKIRALADLPIEWHFIGP
IQSNKTKLIAENFSWVHGIDREKIATRLSAARPESLPPLQVCVQVNVSGEITKSGVDPEKAAELAAFVSEQPRLQLRGIM
AVPELTAVTALQREQFQMMREVYEQLKQKGFILDTLSMGMSEDLENAIAEGATMVRIGTAIFGQRRYAIPEELGSRP

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=241, Percent_Identity=35.6846473029046, Blast_Score=116, Evalue=2e-26,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=51.7241379310345, Blast_Score=231, Evalue=4e-62,
Organism=Caenorhabditis elegans, GI17533025, Length=212, Percent_Identity=37.2641509433962, Blast_Score=112, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6319435, Length=239, Percent_Identity=34.7280334728033, Blast_Score=107, Evalue=2e-24,
Organism=Drosophila melanogaster, GI45550861, Length=219, Percent_Identity=37.4429223744292, Blast_Score=124, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26354; Mature: 26222

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTIASRLQNVKNRIIDAAKNVGRDPATIQLLAASKTNTPDKLREAWEAGQTVFGENYLQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHH
EGLVKIRALADLPIEWHFIGPIQSNKTKLIAENFSWVHGIDREKIATRLSAARPESLPPL
HHHHHHHHHHCCCEEEEEECCCCCCCCEEEHHCCHHHHCCCHHHHHHHHHHCCCCCCCCE
QVCVQVNVSGEITKSGVDPEKAAELAAFVSEQPRLQLRGIMAVPELTAVTALQREQFQMM
EEEEEECCCCCEECCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHH
REVYEQLKQKGFILDTLSMGMSEDLENAIAEGATMVRIGTAIFGQRRYAIPEELGSRP
HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHCCCHHEEHHHHHHCCCCCCCCHHHCCCC
>Mature Secondary Structure 
TTIASRLQNVKNRIIDAAKNVGRDPATIQLLAASKTNTPDKLREAWEAGQTVFGENYLQ
CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHH
EGLVKIRALADLPIEWHFIGPIQSNKTKLIAENFSWVHGIDREKIATRLSAARPESLPPL
HHHHHHHHHHCCCEEEEEECCCCCCCCEEEHHCCHHHHCCCHHHHHHHHHHCCCCCCCCE
QVCVQVNVSGEITKSGVDPEKAAELAAFVSEQPRLQLRGIMAVPELTAVTALQREQFQMM
EEEEEECCCCCEECCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHH
REVYEQLKQKGFILDTLSMGMSEDLENAIAEGATMVRIGTAIFGQRRYAIPEELGSRP
HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHCCCHHEEHHHHHHCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]