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The map label for this gene is ydiU [C]

Identifier: 114332167

GI number: 114332167

Start: 2332864

End: 2334579

Strand: Reverse

Name: ydiU [C]

Synonym: Neut_2204

Alternate gene names: 114332167

Gene position: 2334579-2332864 (Counterclockwise)

Preceding gene: 114332168

Following gene: 114332166

Centisome position: 87.73

GC content: 54.02

Gene sequence:

>1716_bases
ATGATAAAGCGACTGACCCAAGAAACACCCCCTATCATTGCGACTCTTGACGATCTCGCAAAATTGGCAAATTATTCGTT
CATGGATTCTCTCAACTGCGACCCTGACGCGGAAGTAAACGGACGCAACCACACGCCGCGGCAAGTCTTTACGGGTCACT
ATGTTCCCGTCAACCCCACGCCAATTGAAGACCCCGAGTACGTGGCGCACAGTAAAAACTTTTTTCGCGAACTGGGCTTT
GCCAACAGCATGGCGACGTCGGCCGACTTCGTCCGCGTGTTCTCCGGCGACCTTGCCCATGTTCCGGAGCCGATGCGCAA
GGTCGGTTGGGCGTGTGGCTATGCACTTTCCATCTTCGGCACCGAATACTACCAGCAATGCCCGTTCCAAACCGGCAATG
GATATGGCGACGGGCGCGCAATTTCAGTGCTTGAGGCCGTCATCAACGGTCAGCGTTGGGAAATGCAGCTAAAAGGTGGT
GGCCGGACACCCTATTGCCGGGGCGCCGACGGACGGGCCGTTCTGCGGTCGAGTGTCCGGGAGTTTCTGGCACAGGAGCA
CATGCATGCGCTTGGGGTGCCAACGTCTCGATCTTTGAGTTTGTATGTTTCAAAAACGGAGAAGGTCCGCCGGCCATGGT
ACTCGGAGGGTTCACACTCGCAGGATCCGGACATGCTTGTATCGGAAGCGGTTGCCATCTCGACACGCGTGGCATCTTCG
TTCATTCGGGTTGGTCAACTCGAGCTCTTCGGTCGCCGTGCCCGCAAGATGGAACACCCACGAGCGATGGAAGAGCTCGA
AAAGATTGTGTTGCATTTGATCGATCGTGAGTACGATAACGTCATCGACCAGAAGCTGGCGACCACCGAAAAAGTGGTGT
TGCTTGCCCGTGAATTTCTCAACCGACTCACGTCGCTGGTGGCGAACTGGATCCGCGTCGGCTACTGTCAGGGTAACTTC
AACAGTGACAACTGTGCGGCTGGCGGCTTCACACTCGACTACGGCCCATTCGGATTCTGTGATGTGTTCAATCCACATTA
CCAGCCTTGGACGGGTGGTGGGCGTCATTACTCGTTCCTGAACCAACCCGTGGCAGCAGAACGCAACTTCCACATGTTTT
GTTCGGCATTGCGGCCGTTGCTGATGGCGCATCAGGACTGTCTGGCGCAGCTCGACGAGATCCAAAGTGATTTTCCAAAG
GTGATGCAAGCGCAAATGGAGAAGATGTGGGCTGCCAAGCTTGGGCTTGGCACTTTTCATGCGACGTTGTTCAGCGAGCT
GGTAACGTTGATGCTGCAAACATCGGTTGATTACACCATGTTCTTCCGTGAGCTCTCGATGGTGCCCGACGATATTGGCT
TACTCAAAAAAAGCTTCTACAAGAACTCGACGTATCATGCAGACTCGGAAGGGATGGACAAACGATGGTCAGCGTGGCTC
ACAAAATGGAAGTCGCTCACTCAATCTTGCTCTCGTGAGGAACTTTCTCGCCAGATGAAACGCGTCAACCCAAAATACAG
TTTGCGGGAATGGTTCGTGGTGCCTGCGTATCAGCAAGCGGCTACAGGAGACTACTCTTTAATTCAAGAGCTGCAGGAGG
TCATGACACAACCATACGCCGAGCAATCGAAGGACGTGGATGAGAAATACTATAGGCTGAAGCCACTGGAGTTGTTTGGC
GTCGGTGGGTCGTCGCATTTAAGCTGTTCATCGTGA

Upstream 100 bases:

>100_bases
TTGCCGGCGTTTCCGCCTCTGAGAAAATACCCACTTGCGCGATGCCATCACTTCCTGGAGTTCCCCGGTACATCCCCTGG
TCCACGCATGAGGAGCCCTT

Downstream 100 bases:

>100_bases
CTTTTCAAAAACCGATTGGAGCTATGGGCGTGGCCACACCAATGTTGGAAGCGCTGCTGAGACTAGAGGACAGCACCGCA
AGGCATAAAATCCCGGGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 571; Mature: 571

Protein sequence:

>571_residues
MIKRLTQETPPIIATLDDLAKLANYSFMDSLNCDPDAEVNGRNHTPRQVFTGHYVPVNPTPIEDPEYVAHSKNFFRELGF
ANSMATSADFVRVFSGDLAHVPEPMRKVGWACGYALSIFGTEYYQQCPFQTGNGYGDGRAISVLEAVINGQRWEMQLKGG
GRTPYCRGADGRAVLRSSVREFLAQEHMHALGVPTSRSLSLYVSKTEKVRRPWYSEGSHSQDPDMLVSEAVAISTRVASS
FIRVGQLELFGRRARKMEHPRAMEELEKIVLHLIDREYDNVIDQKLATTEKVVLLAREFLNRLTSLVANWIRVGYCQGNF
NSDNCAAGGFTLDYGPFGFCDVFNPHYQPWTGGGRHYSFLNQPVAAERNFHMFCSALRPLLMAHQDCLAQLDEIQSDFPK
VMQAQMEKMWAAKLGLGTFHATLFSELVTLMLQTSVDYTMFFRELSMVPDDIGLLKKSFYKNSTYHADSEGMDKRWSAWL
TKWKSLTQSCSREELSRQMKRVNPKYSLREWFVVPAYQQAATGDYSLIQELQEVMTQPYAEQSKDVDEKYYRLKPLELFG
VGGSSHLSCSS

Sequences:

>Translated_571_residues
MIKRLTQETPPIIATLDDLAKLANYSFMDSLNCDPDAEVNGRNHTPRQVFTGHYVPVNPTPIEDPEYVAHSKNFFRELGF
ANSMATSADFVRVFSGDLAHVPEPMRKVGWACGYALSIFGTEYYQQCPFQTGNGYGDGRAISVLEAVINGQRWEMQLKGG
GRTPYCRGADGRAVLRSSVREFLAQEHMHALGVPTSRSLSLYVSKTEKVRRPWYSEGSHSQDPDMLVSEAVAISTRVASS
FIRVGQLELFGRRARKMEHPRAMEELEKIVLHLIDREYDNVIDQKLATTEKVVLLAREFLNRLTSLVANWIRVGYCQGNF
NSDNCAAGGFTLDYGPFGFCDVFNPHYQPWTGGGRHYSFLNQPVAAERNFHMFCSALRPLLMAHQDCLAQLDEIQSDFPK
VMQAQMEKMWAAKLGLGTFHATLFSELVTLMLQTSVDYTMFFRELSMVPDDIGLLKKSFYKNSTYHADSEGMDKRWSAWL
TKWKSLTQSCSREELSRQMKRVNPKYSLREWFVVPAYQQAATGDYSLIQELQEVMTQPYAEQSKDVDEKYYRLKPLELFG
VGGSSHLSCSS
>Mature_571_residues
MIKRLTQETPPIIATLDDLAKLANYSFMDSLNCDPDAEVNGRNHTPRQVFTGHYVPVNPTPIEDPEYVAHSKNFFRELGF
ANSMATSADFVRVFSGDLAHVPEPMRKVGWACGYALSIFGTEYYQQCPFQTGNGYGDGRAISVLEAVINGQRWEMQLKGG
GRTPYCRGADGRAVLRSSVREFLAQEHMHALGVPTSRSLSLYVSKTEKVRRPWYSEGSHSQDPDMLVSEAVAISTRVASS
FIRVGQLELFGRRARKMEHPRAMEELEKIVLHLIDREYDNVIDQKLATTEKVVLLAREFLNRLTSLVANWIRVGYCQGNF
NSDNCAAGGFTLDYGPFGFCDVFNPHYQPWTGGGRHYSFLNQPVAAERNFHMFCSALRPLLMAHQDCLAQLDEIQSDFPK
VMQAQMEKMWAAKLGLGTFHATLFSELVTLMLQTSVDYTMFFRELSMVPDDIGLLKKSFYKNSTYHADSEGMDKRWSAWL
TKWKSLTQSCSREELSRQMKRVNPKYSLREWFVVPAYQQAATGDYSLIQELQEVMTQPYAEQSKDVDEKYYRLKPLELFG
VGGSSHLSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=421, Percent_Identity=31.353919239905, Blast_Score=165, Evalue=1e-40,
Organism=Escherichia coli, GI1787999, Length=530, Percent_Identity=29.811320754717, Blast_Score=184, Evalue=2e-47,
Organism=Saccharomyces cerevisiae, GI6325034, Length=408, Percent_Identity=28.6764705882353, Blast_Score=135, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 64800; Mature: 64800

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRLTQETPPIIATLDDLAKLANYSFMDSLNCDPDAEVNGRNHTPRQVFTGHYVPVNPT
CCCCHHCCCCCCEEEHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCHHHCCCEECCCCC
PIEDPEYVAHSKNFFRELGFANSMATSADFVRVFSGDLAHVPEPMRKVGWACGYALSIFG
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHH
TEYYQQCPFQTGNGYGDGRAISVLEAVINGQRWEMQLKGGGRTPYCRGADGRAVLRSSVR
HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
EFLAQEHMHALGVPTSRSLSLYVSKTEKVRRPWYSEGSHSQDPDMLVSEAVAISTRVASS
HHHHHHHHHHHCCCCCCCEEEEEECHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
FIRVGQLELFGRRARKMEHPRAMEELEKIVLHLIDREYDNVIDQKLATTEKVVLLAREFL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRLTSLVANWIRVGYCQGNFNSDNCAAGGFTLDYGPFGFCDVFNPHYQPWTGGGRHYSFL
HHHHHHHHHHHHEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHH
NQPVAAERNFHMFCSALRPLLMAHQDCLAQLDEIQSDFPKVMQAQMEKMWAAKLGLGTFH
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
ATLFSELVTLMLQTSVDYTMFFRELSMVPDDIGLLKKSFYKNSTYHADSEGMDKRWSAWL
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
TKWKSLTQSCSREELSRQMKRVNPKYSLREWFVVPAYQQAATGDYSLIQELQEVMTQPYA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEECCHHHHCCCCHHHHHHHHHHHHCCHH
EQSKDVDEKYYRLKPLELFGVGGSSHLSCSS
HHCCCHHHHHHHCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MIKRLTQETPPIIATLDDLAKLANYSFMDSLNCDPDAEVNGRNHTPRQVFTGHYVPVNPT
CCCCHHCCCCCCEEEHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCHHHCCCEECCCCC
PIEDPEYVAHSKNFFRELGFANSMATSADFVRVFSGDLAHVPEPMRKVGWACGYALSIFG
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHH
TEYYQQCPFQTGNGYGDGRAISVLEAVINGQRWEMQLKGGGRTPYCRGADGRAVLRSSVR
HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
EFLAQEHMHALGVPTSRSLSLYVSKTEKVRRPWYSEGSHSQDPDMLVSEAVAISTRVASS
HHHHHHHHHHHCCCCCCCEEEEEECHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
FIRVGQLELFGRRARKMEHPRAMEELEKIVLHLIDREYDNVIDQKLATTEKVVLLAREFL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRLTSLVANWIRVGYCQGNFNSDNCAAGGFTLDYGPFGFCDVFNPHYQPWTGGGRHYSFL
HHHHHHHHHHHHEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHH
NQPVAAERNFHMFCSALRPLLMAHQDCLAQLDEIQSDFPKVMQAQMEKMWAAKLGLGTFH
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
ATLFSELVTLMLQTSVDYTMFFRELSMVPDDIGLLKKSFYKNSTYHADSEGMDKRWSAWL
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
TKWKSLTQSCSREELSRQMKRVNPKYSLREWFVVPAYQQAATGDYSLIQELQEVMTQPYA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEECCHHHHCCCCHHHHHHHHHHHHCCHH
EQSKDVDEKYYRLKPLELFGVGGSSHLSCSS
HHCCCHHHHHHHCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA