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The map label for this gene is cirA [C]

Identifier: 114332004

GI number: 114332004

Start: 2153158

End: 2155170

Strand: Reverse

Name: cirA [C]

Synonym: Neut_2038

Alternate gene names: 114332004

Gene position: 2155170-2153158 (Counterclockwise)

Preceding gene: 114332012

Following gene: 114332003

Centisome position: 80.99

GC content: 49.48

Gene sequence:

>2013_bases
ATGGTATTTGGGTCTGCAGCAACTGAGTCCATATCACTTAAACCTATCGTGGTGACGGCTGATCCTTTAAGTGGAACTCA
GGCAGATATACCCAAGCCTGTATCAATTTTGCAACGAGAACGTATTCAAACACATGATTTACGTAACATTGGTGAGGCAG
TTTCTCAGGAGTTGGGTGTGTCCAGCAGTGATTTCGGGCCGGCAGTCGGTCGCCCGATAATCCGCGGCCTGGGTGGCGCG
CGGGTGCGGGTGCTGGAGGATGGTGTCGGTACGATGGATGTTTCCACGGTCAGCCCTGATCATGCCGTGGCAGTAGAGGC
ATTGTTTGCCGATCAGGTTGAAATTTTTCGCGGGCCTTCGGCTTTGCTTTATGGCTCCGGAGCCAGTGGTGGGGTGGTGA
ATGTCGTGAATCAACGAATACCAGATCATATTCCTGATAAAACGGAGGGAGATCTGTATGGGCATTACAGTTCGGTTGCT
GATGATTTTACGGGAGCATTCCGACTTAATACGGGGGGCGGACATTTTGCCTGGCATCTGGATGGAATGAAGCGGCACAC
CGGGAATTATTCGATACCCGGTTTCGCGCAGATTGAGCCAGAGCCCAGTGCGAGAAAAGGTGTGCTTGAGAACAGTGATG
TCCGGACAGAAAATTTTTCCAGTGGTTTGTCTTATATTGATGAACGGGGGTTTTTAGGGATTGCGGTTAGTCGCTTTATT
AATCACTATGGTGTGCCCGGACATGATCACGGGCATGACGAAGATTTGCATGATGACGATGTTGCGCCGGGCCATGAAGA
AGGGGCGCGAATCAGACAAAAACAGACGCGTTTTGATATGAAGGGAGCATTAAATCGACCTTTGCCCGGGTTGCAGAAAA
TAAAACTGCGCTGGGGTTATAACGATCATGCGCATCGGGAATCGGGAGATGATGGGAGCGGAACATTGCTGTTAAATCGT
GAGTGGGATGGTCGGCTTGAGATGCTGCACCAGCCCTTAAACAATTGGAAGGGCGTGCTGGGATTACAATACCAGAACCG
CAATCTTGCTACTGCTGGTGAAGAAGCCTTTGTTCCCGATTCTCGCTTGGATTCACTGGGAATGTTTTTGCTGGAAAAAC
TGAATGTCGGACGCTGGATTGTTGAAGTGGGTGGGCGCTTTGAACATCAATGGACAGAGCGTAAAAATGACGCTGTCGCA
GTCAGTCATAACATATTCAGTATTTCGAGTGGTGCAACGTGGAAATTTCAGGAGGATTATTCGCTGGGCGGGAGTCTTTC
CTACGCGCTGCGCGCCCCGGCATTGGAAGAGCTGTATTCCAACGGGCCGCATCTGGCCACAAATACATTTGAAGTGGGCA
AAACTACGCTCTCGCCGGAAAAGACCAGTAGTATTGATCTGTCTCTGAGCAAACAGAACGGGAATTTAAACTGGACACTT
AACCTGTTTGCTAAACGGATCAATGATTTTATATTTTTACGGGAATCAGATTTGACAGGTGACAGATTGCCGGATCGTGT
TGATATCAAGGGTGCGTTGGACAAGGATGGCTTGTTATTACTGAATTACGATCAGAGTAATGCAAATTTCATAGGAGCGG
AATTCGAGACGAATATTCATCTGCTAAACGATCGTCACGGCAAACTGGATTTGCGATTGTGGACTGACTACGTGCGTGGG
CGGCTGTCCACAGGGGGATATTTGCCACGGATAACGCCACTTCGTTTTGGTGGGGCGCTCGATTATGTCTATGGCCCCTG
GCGAGGGAAGGTTGATGTGATGCAAGTATATAAACAGACTGATACCGCTTCACTGGAAACAGCTACTGCCGGCTATACGA
TGCTGAATATTCAGCTGGATTACGGGTTTGACTGGGGAGAGATGAATTGCAGCCTGTTCGTGCGAGGCTCCAACTTGTTA
AATGAAGAGGCGCGGCGACATACCTCCTTTTTAAAGGATCGCGCGCCATTGCCCGGGCGTTCTGGTCTTGCGGGAGTGCG
TGTGAATTTTTAG

Upstream 100 bases:

>100_bases
TTCAGGAAAGCCGAAGGCTTTAACCGCTCTGATAATGTTTGCAGGGCTGTTGATTTCGTTTTGTGCTTGCGCCCGGGATG
TATCGGAGGTGTCCAATGGT

Downstream 100 bases:

>100_bases
GATGAATACTATGATGAACTCAGGCTTCCGGGGTGGCTGAAATTCATTGATTCATTGCAAGCTTTTTGTTCGCAACGATT
ATGCTGTTTTCATATTTGAT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 670; Mature: 670

Protein sequence:

>670_residues
MVFGSAATESISLKPIVVTADPLSGTQADIPKPVSILQRERIQTHDLRNIGEAVSQELGVSSSDFGPAVGRPIIRGLGGA
RVRVLEDGVGTMDVSTVSPDHAVAVEALFADQVEIFRGPSALLYGSGASGGVVNVVNQRIPDHIPDKTEGDLYGHYSSVA
DDFTGAFRLNTGGGHFAWHLDGMKRHTGNYSIPGFAQIEPEPSARKGVLENSDVRTENFSSGLSYIDERGFLGIAVSRFI
NHYGVPGHDHGHDEDLHDDDVAPGHEEGARIRQKQTRFDMKGALNRPLPGLQKIKLRWGYNDHAHRESGDDGSGTLLLNR
EWDGRLEMLHQPLNNWKGVLGLQYQNRNLATAGEEAFVPDSRLDSLGMFLLEKLNVGRWIVEVGGRFEHQWTERKNDAVA
VSHNIFSISSGATWKFQEDYSLGGSLSYALRAPALEELYSNGPHLATNTFEVGKTTLSPEKTSSIDLSLSKQNGNLNWTL
NLFAKRINDFIFLRESDLTGDRLPDRVDIKGALDKDGLLLLNYDQSNANFIGAEFETNIHLLNDRHGKLDLRLWTDYVRG
RLSTGGYLPRITPLRFGGALDYVYGPWRGKVDVMQVYKQTDTASLETATAGYTMLNIQLDYGFDWGEMNCSLFVRGSNLL
NEEARRHTSFLKDRAPLPGRSGLAGVRVNF

Sequences:

>Translated_670_residues
MVFGSAATESISLKPIVVTADPLSGTQADIPKPVSILQRERIQTHDLRNIGEAVSQELGVSSSDFGPAVGRPIIRGLGGA
RVRVLEDGVGTMDVSTVSPDHAVAVEALFADQVEIFRGPSALLYGSGASGGVVNVVNQRIPDHIPDKTEGDLYGHYSSVA
DDFTGAFRLNTGGGHFAWHLDGMKRHTGNYSIPGFAQIEPEPSARKGVLENSDVRTENFSSGLSYIDERGFLGIAVSRFI
NHYGVPGHDHGHDEDLHDDDVAPGHEEGARIRQKQTRFDMKGALNRPLPGLQKIKLRWGYNDHAHRESGDDGSGTLLLNR
EWDGRLEMLHQPLNNWKGVLGLQYQNRNLATAGEEAFVPDSRLDSLGMFLLEKLNVGRWIVEVGGRFEHQWTERKNDAVA
VSHNIFSISSGATWKFQEDYSLGGSLSYALRAPALEELYSNGPHLATNTFEVGKTTLSPEKTSSIDLSLSKQNGNLNWTL
NLFAKRINDFIFLRESDLTGDRLPDRVDIKGALDKDGLLLLNYDQSNANFIGAEFETNIHLLNDRHGKLDLRLWTDYVRG
RLSTGGYLPRITPLRFGGALDYVYGPWRGKVDVMQVYKQTDTASLETATAGYTMLNIQLDYGFDWGEMNCSLFVRGSNLL
NEEARRHTSFLKDRAPLPGRSGLAGVRVNF
>Mature_670_residues
MVFGSAATESISLKPIVVTADPLSGTQADIPKPVSILQRERIQTHDLRNIGEAVSQELGVSSSDFGPAVGRPIIRGLGGA
RVRVLEDGVGTMDVSTVSPDHAVAVEALFADQVEIFRGPSALLYGSGASGGVVNVVNQRIPDHIPDKTEGDLYGHYSSVA
DDFTGAFRLNTGGGHFAWHLDGMKRHTGNYSIPGFAQIEPEPSARKGVLENSDVRTENFSSGLSYIDERGFLGIAVSRFI
NHYGVPGHDHGHDEDLHDDDVAPGHEEGARIRQKQTRFDMKGALNRPLPGLQKIKLRWGYNDHAHRESGDDGSGTLLLNR
EWDGRLEMLHQPLNNWKGVLGLQYQNRNLATAGEEAFVPDSRLDSLGMFLLEKLNVGRWIVEVGGRFEHQWTERKNDAVA
VSHNIFSISSGATWKFQEDYSLGGSLSYALRAPALEELYSNGPHLATNTFEVGKTTLSPEKTSSIDLSLSKQNGNLNWTL
NLFAKRINDFIFLRESDLTGDRLPDRVDIKGALDKDGLLLLNYDQSNANFIGAEFETNIHLLNDRHGKLDLRLWTDYVRG
RLSTGGYLPRITPLRFGGALDYVYGPWRGKVDVMQVYKQTDTASLETATAGYTMLNIQLDYGFDWGEMNCSLFVRGSNLL
NEEARRHTSFLKDRAPLPGRSGLAGVRVNF

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 73929; Mature: 73929

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFGSAATESISLKPIVVTADPLSGTQADIPKPVSILQRERIQTHDLRNIGEAVSQELGV
CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SSSDFGPAVGRPIIRGLGGARVRVLEDGVGTMDVSTVSPDHAVAVEALFADQVEIFRGPS
CCCCCCCHHCCHHHHCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCC
ALLYGSGASGGVVNVVNQRIPDHIPDKTEGDLYGHYSSVADDFTGAFRLNTGGGHFAWHL
EEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCEEEEEE
DGMKRHTGNYSIPGFAQIEPEPSARKGVLENSDVRTENFSSGLSYIDERGFLGIAVSRFI
CCHHHCCCCCCCCCEEEECCCCCHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH
NHYGVPGHDHGHDEDLHDDDVAPGHEEGARIRQKQTRFDMKGALNRPLPGLQKIKLRWGY
HHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
NDHAHRESGDDGSGTLLLNREWDGRLEMLHQPLNNWKGVLGLQYQNRNLATAGEEAFVPD
CCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
SRLDSLGMFLLEKLNVGRWIVEVGGRFEHQWTERKNDAVAVSHNIFSISSGATWKFQEDY
HHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCEEEEEECEEEECCCCEEEECCCC
SLGGSLSYALRAPALEELYSNGPHLATNTFEVGKTTLSPEKTSSIDLSLSKQNGNLNWTL
CCCCCEEEEECCCHHHHHHCCCCCEEECEEECCCEECCCCCCCEEEEEEECCCCCEEEEH
NLFAKRINDFIFLRESDLTGDRLPDRVDIKGALDKDGLLLLNYDQSNANFIGAEFETNIH
HHHHHHHCCEEEEECCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCCEEEEEEECCEE
LLNDRHGKLDLRLWTDYVRGRLSTGGYLPRITPLRFGGALDYVYGPWRGKVDVMQVYKQT
EEECCCCEEEEEEEHHHHHCCCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHHC
DTASLETATAGYTMLNIQLDYGFDWGEMNCSLFVRGSNLLNEEARRHTSFLKDRAPLPGR
CCCCEEEECCCEEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCC
SGLAGVRVNF
CCCCEEEEEC
>Mature Secondary Structure
MVFGSAATESISLKPIVVTADPLSGTQADIPKPVSILQRERIQTHDLRNIGEAVSQELGV
CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SSSDFGPAVGRPIIRGLGGARVRVLEDGVGTMDVSTVSPDHAVAVEALFADQVEIFRGPS
CCCCCCCHHCCHHHHCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCC
ALLYGSGASGGVVNVVNQRIPDHIPDKTEGDLYGHYSSVADDFTGAFRLNTGGGHFAWHL
EEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCEEEEEE
DGMKRHTGNYSIPGFAQIEPEPSARKGVLENSDVRTENFSSGLSYIDERGFLGIAVSRFI
CCHHHCCCCCCCCCEEEECCCCCHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH
NHYGVPGHDHGHDEDLHDDDVAPGHEEGARIRQKQTRFDMKGALNRPLPGLQKIKLRWGY
HHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
NDHAHRESGDDGSGTLLLNREWDGRLEMLHQPLNNWKGVLGLQYQNRNLATAGEEAFVPD
CCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
SRLDSLGMFLLEKLNVGRWIVEVGGRFEHQWTERKNDAVAVSHNIFSISSGATWKFQEDY
HHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCEEEEEECEEEECCCCEEEECCCC
SLGGSLSYALRAPALEELYSNGPHLATNTFEVGKTTLSPEKTSSIDLSLSKQNGNLNWTL
CCCCCEEEEECCCHHHHHHCCCCCEEECEEECCCEECCCCCCCEEEEEEECCCCCEEEEH
NLFAKRINDFIFLRESDLTGDRLPDRVDIKGALDKDGLLLLNYDQSNANFIGAEFETNIH
HHHHHHHCCEEEEECCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCCEEEEEEECCEE
LLNDRHGKLDLRLWTDYVRGRLSTGGYLPRITPLRFGGALDYVYGPWRGKVDVMQVYKQT
EEECCCCEEEEEEEHHHHHCCCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHHC
DTASLETATAGYTMLNIQLDYGFDWGEMNCSLFVRGSNLLNEEARRHTSFLKDRAPLPGR
CCCCEEEECCCEEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCC
SGLAGVRVNF
CCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]