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The map label for this gene is 114331955

Identifier: 114331955

GI number: 114331955

Start: 2103017

End: 2103631

Strand: Direct

Name: 114331955

Synonym: Neut_1987

Alternate gene names: NA

Gene position: 2103017-2103631 (Clockwise)

Preceding gene: 114331954

Following gene: 114331956

Centisome position: 79.03

GC content: 37.24

Gene sequence:

>615_bases
ATGAAAAAAATAGATGGAATGAAATTGAGGGCCTTTCGGAATTACTATTTTCAAGTTATTACTATCTTATTCCTTACTCT
TGTACAAGCTGATATCAGAGCAGCAACTATTACATTATCCCGTCCAATAACATTACAGCCAGAAACAATCATTCACCTCG
AACAAGCTAGTACAACTGGTACCAGTCAGTGGAAGCTCATTGTTTTCGGATTTACTCACTGCAAAGATGTCTGTCCGATG
TCACTTGTTAATTTATCCACGATGGTTAAAACAGCAATTAGTGAACAGATTGATATCAATGGAATTTTTGTCACGGTTGA
TCCGGATAGAGACACAGAAGCAATCTTGGCCAATTATACGAAAAGCTTTGGCACCGACATTTCCTATTTACGTTTTGAAG
GAGAAGAACTGGAGCGTTTCAAAAACGCCTTTCAGGTAGAGGCTATCTTTTATACAAAGAATGTGGGTAACCAAACCCAT
TATCAGGTTGATCACAGTACCACAGCCTTTCTGGTCGATCCAGCAGGAAGAATTAGAGTAATTTTTGATGCTTTAAAAGA
TGCCAGAGATATGGCAAGAATTTTTCATGAAGACAAAAAATTATTCAAATCATGA

Upstream 100 bases:

>100_bases
CTGATTCATCTTCTTTTATCCAAAAAATTATCAGATAAAAATTAGGATGAATCAGTTTAAAAACAAGTAATGAATGCAAA
ACAGTTATTAAGGATGACTA

Downstream 100 bases:

>100_bases
ATAGGATGATATTAGTTGCAATCCTATTCATGGTAACAAAATCTGTTTTTAGCATGACAATAGATCCTGATCCCCGAATA
ATTGTCTCTTTTATGGACAA

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MKKIDGMKLRAFRNYYFQVITILFLTLVQADIRAATITLSRPITLQPETIIHLEQASTTGTSQWKLIVFGFTHCKDVCPM
SLVNLSTMVKTAISEQIDINGIFVTVDPDRDTEAILANYTKSFGTDISYLRFEGEELERFKNAFQVEAIFYTKNVGNQTH
YQVDHSTTAFLVDPAGRIRVIFDALKDARDMARIFHEDKKLFKS

Sequences:

>Translated_204_residues
MKKIDGMKLRAFRNYYFQVITILFLTLVQADIRAATITLSRPITLQPETIIHLEQASTTGTSQWKLIVFGFTHCKDVCPM
SLVNLSTMVKTAISEQIDINGIFVTVDPDRDTEAILANYTKSFGTDISYLRFEGEELERFKNAFQVEAIFYTKNVGNQTH
YQVDHSTTAFLVDPAGRIRVIFDALKDARDMARIFHEDKKLFKS
>Mature_204_residues
MKKIDGMKLRAFRNYYFQVITILFLTLVQADIRAATITLSRPITLQPETIIHLEQASTTGTSQWKLIVFGFTHCKDVCPM
SLVNLSTMVKTAISEQIDINGIFVTVDPDRDTEAILANYTKSFGTDISYLRFEGEELERFKNAFQVEAIFYTKNVGNQTH
YQVDHSTTAFLVDPAGRIRVIFDALKDARDMARIFHEDKKLFKS

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=118, Percent_Identity=35.5932203389831, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI281182727, Length=118, Percent_Identity=31.3559322033898, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI281182722, Length=118, Percent_Identity=31.3559322033898, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI281182716, Length=118, Percent_Identity=31.3559322033898, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI153791313, Length=118, Percent_Identity=31.3559322033898, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17531419, Length=137, Percent_Identity=25.5474452554745, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6319511, Length=119, Percent_Identity=33.6134453781513, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19920710, Length=117, Percent_Identity=35.8974358974359, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23328; Mature: 23328

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIDGMKLRAFRNYYFQVITILFLTLVQADIRAATITLSRPITLQPETIIHLEQASTTG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEECCCEEEEEECCCCCC
TSQWKLIVFGFTHCKDVCPMSLVNLSTMVKTAISEQIDINGIFVTVDPDRDTEAILANYT
CCCEEEEEEECHHHHHCCCHHHHHHHHHHHHHHHCCEECCEEEEEECCCCCHHHHHHHHH
KSFGTDISYLRFEGEELERFKNAFQVEAIFYTKNVGNQTHYQVDHSTTAFLVDPAGRIRV
HHHCCCEEEEEECCHHHHHHHHHHEEEEEEEECCCCCCEEEEECCCCEEEEECCCCCCHH
IFDALKDARDMARIFHEDKKLFKS
HHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKIDGMKLRAFRNYYFQVITILFLTLVQADIRAATITLSRPITLQPETIIHLEQASTTG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEECCCEEEEEECCCCCC
TSQWKLIVFGFTHCKDVCPMSLVNLSTMVKTAISEQIDINGIFVTVDPDRDTEAILANYT
CCCEEEEEEECHHHHHCCCHHHHHHHHHHHHHHHCCEECCEEEEEECCCCCHHHHHHHHH
KSFGTDISYLRFEGEELERFKNAFQVEAIFYTKNVGNQTHYQVDHSTTAFLVDPAGRIRV
HHHCCCEEEEEECCHHHHHHHHHHEEEEEEEECCCCCCEEEEECCCCEEEEECCCCCCHH
IFDALKDARDMARIFHEDKKLFKS
HHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]