Click here to switch to the map view.

The map label for this gene is 114331835

Identifier: 114331835

GI number: 114331835

Start: 1970852

End: 1971277

Strand: Reverse

Name: 114331835

Synonym: Neut_1860

Alternate gene names: NA

Gene position: 1971277-1970852 (Counterclockwise)

Preceding gene: 114331837

Following gene: 114331834

Centisome position: 74.08

GC content: 49.06

Gene sequence:

>426_bases
ATGCCTCAGATAAATGAGATAAAAGAGCCGGACCTTGCCTTCGCGGGGTTAGCTTTACTCATTATATTTGGACTCTTGAT
CTGGTATGACCGTCCTATCGAGAGTACCCGGCCCTTTGATTCATACGCCTCACCTCAAGCCTCGCCTGTTACTGGACATG
CTTATGAAAGCTGGTTATGGCAGGGTCTTTTCAGTTTTGACCAGCTGTGCCAGGAACTCGGTATCGAACATTGCCTGACC
CGGCCACGCACTCCGCAAACCAATGGGATGGTCGAACGTTTCAACGGGTGTATTGCTGACGTACTCAAAACACATCGATT
CAATAGCGCTGAAGATGAGCTGGAAACAGACGGGATGCGACAGCGGGTAAATATCTCAACTTGTTTGGATAATCTCCTGG
CAAATTTCCTCGGAGCCGCCAATTGA

Upstream 100 bases:

>100_bases
TATTCAGCAGTATTTCTGCCTCGCCATCCGATTTATGTATAATAAATTTTAGAAAAAAGGGCGTTTATTTTTCCTGTACG
CGGTTAGTGTTAGTAAAACG

Downstream 100 bases:

>100_bases
ACTTACTTTCCCTGGAAAAAATTATCTTCTCTCCAGCAATGCTTTCAGTTCCTATTTTCCCGGTCAATTTCGCTTCGTGT
GTGTACGCCTACACCATCAA

Product: hypothetical protein

Products: NA

Alternate protein names: Integrase Catalytic Subunit; Transposase; Integrase

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MPQINEIKEPDLAFAGLALLIIFGLLIWYDRPIESTRPFDSYASPQASPVTGHAYESWLWQGLFSFDQLCQELGIEHCLT
RPRTPQTNGMVERFNGCIADVLKTHRFNSAEDELETDGMRQRVNISTCLDNLLANFLGAAN

Sequences:

>Translated_141_residues
MPQINEIKEPDLAFAGLALLIIFGLLIWYDRPIESTRPFDSYASPQASPVTGHAYESWLWQGLFSFDQLCQELGIEHCLT
RPRTPQTNGMVERFNGCIADVLKTHRFNSAEDELETDGMRQRVNISTCLDNLLANFLGAAN
>Mature_140_residues
PQINEIKEPDLAFAGLALLIIFGLLIWYDRPIESTRPFDSYASPQASPVTGHAYESWLWQGLFSFDQLCQELGIEHCLTR
PRTPQTNGMVERFNGCIADVLKTHRFNSAEDELETDGMRQRVNISTCLDNLLANFLGAAN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15905; Mature: 15774

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQINEIKEPDLAFAGLALLIIFGLLIWYDRPIESTRPFDSYASPQASPVTGHAYESWLW
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
QGLFSFDQLCQELGIEHCLTRPRTPQTNGMVERFNGCIADVLKTHRFNSAEDELETDGMR
HHHHHHHHHHHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
QRVNISTCLDNLLANFLGAAN
HHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PQINEIKEPDLAFAGLALLIIFGLLIWYDRPIESTRPFDSYASPQASPVTGHAYESWLW
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
QGLFSFDQLCQELGIEHCLTRPRTPQTNGMVERFNGCIADVLKTHRFNSAEDELETDGMR
HHHHHHHHHHHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
QRVNISTCLDNLLANFLGAAN
HHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA