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The map label for this gene is sodB [H]

Identifier: 114331202

GI number: 114331202

Start: 1259036

End: 1259674

Strand: Direct

Name: sodB [H]

Synonym: Neut_1204

Alternate gene names: 114331202

Gene position: 1259036-1259674 (Clockwise)

Preceding gene: 114331201

Following gene: 114331203

Centisome position: 47.31

GC content: 43.51

Gene sequence:

>639_bases
ATGAGTACCAGTCTGGATAATTTTTCAAAAGCAGCACAATCGGGTGATACATATGTGTTGCCCCCTCTTCCTTATGCAGA
TAATGCGCTTGAACCAGTTATTTCTGCACATACATTAAGTTTTCATTACGGCAAGCACCATAAAGGCTATGTAGATAATC
TGAATAAACTCGTTATGGGCACTCCATTTGCCGGACAATCACTGGAACAGATTATTATGGCCACAGCTGGCCATGCTGAT
AAAATCGGGATTTTCAATAATGCAGCTCAGGTCTGGAACCACATGTTTTACTGGAACAGCCTCAGCCCTAATGGAGGCGG
TGAACCACCGGCGGCATTAAAACAAAAAATTGAAGAAGCGTTTGGCAGTGTGGAAGCCTTTAAACAGGAATTTGCCACGG
CCGCAATTACACAATTTGGTAGTGGCTGGGCCTGGCTCGCGCAAGAGGGAACAAAGTTAACTATTATTAAGACAAGTAAC
GCTGACTCGCCTTTGACGCGTAGCATTCGCCCTCTGTTGACGATTGATGTATGGGAGCATGCTTACTATTTGGATTTCCA
GAATCGTCGACCTGATTATGTCAATACAGTAATTGATAAATTGATTAATTGGGAATTTGCTGCGGCGAATCTCGCATAA

Upstream 100 bases:

>100_bases
GCTACAGAGGTTACAGGTGCCGGCCAATAATATTTTTATTAACAATATCAATCGTATGATTTCATTATTCAAATTTTTAT
TCAGAAATAAAGGAGAGAAA

Downstream 100 bases:

>100_bases
CGACTATTGATGCCGGATATCACCATAGCTCTTTCCAAGGGGCGAATCTTTGAGGATACTATTCCGTTTCTGGAAGCTGC
CGGCATTATCCCGCAGGATG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MSTSLDNFSKAAQSGDTYVLPPLPYADNALEPVISAHTLSFHYGKHHKGYVDNLNKLVMGTPFAGQSLEQIIMATAGHAD
KIGIFNNAAQVWNHMFYWNSLSPNGGGEPPAALKQKIEEAFGSVEAFKQEFATAAITQFGSGWAWLAQEGTKLTIIKTSN
ADSPLTRSIRPLLTIDVWEHAYYLDFQNRRPDYVNTVIDKLINWEFAAANLA

Sequences:

>Translated_212_residues
MSTSLDNFSKAAQSGDTYVLPPLPYADNALEPVISAHTLSFHYGKHHKGYVDNLNKLVMGTPFAGQSLEQIIMATAGHAD
KIGIFNNAAQVWNHMFYWNSLSPNGGGEPPAALKQKIEEAFGSVEAFKQEFATAAITQFGSGWAWLAQEGTKLTIIKTSN
ADSPLTRSIRPLLTIDVWEHAYYLDFQNRRPDYVNTVIDKLINWEFAAANLA
>Mature_211_residues
STSLDNFSKAAQSGDTYVLPPLPYADNALEPVISAHTLSFHYGKHHKGYVDNLNKLVMGTPFAGQSLEQIIMATAGHADK
IGIFNNAAQVWNHMFYWNSLSPNGGGEPPAALKQKIEEAFGSVEAFKQEFATAAITQFGSGWAWLAQEGTKLTIIKTSNA
DSPLTRSIRPLLTIDVWEHAYYLDFQNRRPDYVNTVIDKLINWEFAAANLA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=201, Percent_Identity=40.7960199004975, Blast_Score=139, Evalue=2e-33,
Organism=Homo sapiens, GI67782305, Length=201, Percent_Identity=40.7960199004975, Blast_Score=139, Evalue=2e-33,
Organism=Homo sapiens, GI67782309, Length=196, Percent_Identity=34.6938775510204, Blast_Score=98, Evalue=4e-21,
Organism=Escherichia coli, GI1787946, Length=197, Percent_Identity=55.8375634517767, Blast_Score=227, Evalue=4e-61,
Organism=Escherichia coli, GI1790342, Length=205, Percent_Identity=44.8780487804878, Blast_Score=160, Evalue=6e-41,
Organism=Caenorhabditis elegans, GI17506561, Length=200, Percent_Identity=38.5, Blast_Score=123, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI17569479, Length=199, Percent_Identity=36.6834170854271, Blast_Score=116, Evalue=8e-27,
Organism=Saccharomyces cerevisiae, GI6321796, Length=203, Percent_Identity=36.4532019704434, Blast_Score=111, Evalue=7e-26,
Organism=Drosophila melanogaster, GI17136812, Length=192, Percent_Identity=38.5416666666667, Blast_Score=122, Evalue=1e-28,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23421; Mature: 23289

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSLDNFSKAAQSGDTYVLPPLPYADNALEPVISAHTLSFHYGKHHKGYVDNLNKLVMG
CCCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHEEEEECCCCCCCHHHHHHHHEEC
TPFAGQSLEQIIMATAGHADKIGIFNNAAQVWNHMFYWNSLSPNGGGEPPAALKQKIEEA
CCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHH
FGSVEAFKQEFATAAITQFGSGWAWLAQEGTKLTIIKTSNADSPLTRSIRPLLTIDVWEH
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCCHHHCCCHHEEEEECCC
AYYLDFQNRRPDYVNTVIDKLINWEFAAANLA
EEEEECCCCCCHHHHHHHHHHHCCHHHCCCCC
>Mature Secondary Structure 
STSLDNFSKAAQSGDTYVLPPLPYADNALEPVISAHTLSFHYGKHHKGYVDNLNKLVMG
CCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHEEEEECCCCCCCHHHHHHHHEEC
TPFAGQSLEQIIMATAGHADKIGIFNNAAQVWNHMFYWNSLSPNGGGEPPAALKQKIEEA
CCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHH
FGSVEAFKQEFATAAITQFGSGWAWLAQEGTKLTIIKTSNADSPLTRSIRPLLTIDVWEH
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCCHHHCCCHHEEEEECCC
AYYLDFQNRRPDYVNTVIDKLINWEFAAANLA
EEEEECCCCCCHHHHHHHHHHHCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]