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The map label for this gene is exbD2 [H]

Identifier: 114331201

GI number: 114331201

Start: 1258531

End: 1258965

Strand: Direct

Name: exbD2 [H]

Synonym: Neut_1203

Alternate gene names: 114331201

Gene position: 1258531-1258965 (Clockwise)

Preceding gene: 114331197

Following gene: 114331202

Centisome position: 47.29

GC content: 43.45

Gene sequence:

>435_bases
ATGAATTTTCAGCGAGGACAGAAAAGAGAAGAACCTGAGATCAATCTCGTTCCTATGATTGATGTGCTAGTGGTAATCCT
CATTTTTCTGGTAATTACTACTACCTATTCAAAATTTTCGGAGCTGGAAATAACGTTGCCACAAGCGGCTGTTGTTGAAG
AAGATCACGTATCGGATGCTCCAAGGATGATAGATATATCGGTCAGTGTTGCGGGAGACTATACGATTAACCATAGTCCA
ATAAAATTTACCAGCATTGAAAGTTTGCGAGATGCTTTGCGATCAGCTGCCCATAACCAGGACAACCCGATCATCGTAAT
CAGTGCGGATGCAAAAGCTACCCATCAGTCAGTTATCACGATTATGGAGGCTGCAAGAACAGCTGGATACAACCAGGTGA
CTTTCGCTACAGAGGTTACAGGTGCCGGCCAATAA

Upstream 100 bases:

>100_bases
ATAGCTTGTCAGCCTGCAAGTTTTAAGAGCAAATCCCGTTTGCTGTATAAGCCCAGCAGGGCAGATTCAGCAGTTTTACT
GGCTTAATACTCAAAGTCTA

Downstream 100 bases:

>100_bases
TATTTTTATTAACAATATCAATCGTATGATTTCATTATTCAAATTTTTATTCAGAAATAAAGGAGAGAAAATGAGTACCA
GTCTGGATAATTTTTCAAAA

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MNFQRGQKREEPEINLVPMIDVLVVILIFLVITTTYSKFSELEITLPQAAVVEEDHVSDAPRMIDISVSVAGDYTINHSP
IKFTSIESLRDALRSAAHNQDNPIIVISADAKATHQSVITIMEAARTAGYNQVTFATEVTGAGQ

Sequences:

>Translated_144_residues
MNFQRGQKREEPEINLVPMIDVLVVILIFLVITTTYSKFSELEITLPQAAVVEEDHVSDAPRMIDISVSVAGDYTINHSP
IKFTSIESLRDALRSAAHNQDNPIIVISADAKATHQSVITIMEAARTAGYNQVTFATEVTGAGQ
>Mature_144_residues
MNFQRGQKREEPEINLVPMIDVLVVILIFLVITTTYSKFSELEITLPQAAVVEEDHVSDAPRMIDISVSVAGDYTINHSP
IKFTSIESLRDALRSAAHNQDNPIIVISADAKATHQSVITIMEAARTAGYNQVTFATEVTGAGQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15769; Mature: 15769

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFQRGQKREEPEINLVPMIDVLVVILIFLVITTTYSKFSELEITLPQAAVVEEDHVSDA
CCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCC
PRMIDISVSVAGDYTINHSPIKFTSIESLRDALRSAAHNQDNPIIVISADAKATHQSVIT
CEEEEEEEEECCCEEECCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHH
IMEAARTAGYNQVTFATEVTGAGQ
HHHHHHHCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MNFQRGQKREEPEINLVPMIDVLVVILIFLVITTTYSKFSELEITLPQAAVVEEDHVSDA
CCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCC
PRMIDISVSVAGDYTINHSPIKFTSIESLRDALRSAAHNQDNPIIVISADAKATHQSVIT
CEEEEEEEEECCCEEECCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHH
IMEAARTAGYNQVTFATEVTGAGQ
HHHHHHHCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301 [H]