Click here to switch to the map view.

The map label for this gene is dedA [H]

Identifier: 114330944

GI number: 114330944

Start: 971518

End: 972168

Strand: Reverse

Name: dedA [H]

Synonym: Neut_0941

Alternate gene names: 114330944

Gene position: 972168-971518 (Counterclockwise)

Preceding gene: 114330945

Following gene: 114330939

Centisome position: 36.53

GC content: 43.01

Gene sequence:

>651_bases
ATGTTTCTTATCGACTTCATTATCCATATTGATAGCCACCTGCGGGAGCTCGTCTTGGAATATGGAATATGGGTCAATGG
CATTCTCTTTCTGATCATTTTTTGTGAAACCGGGCTGGTTGTATTTCCTTTTTTGCCTGGTGATTCCTTGCTGTTTGCTG
CAGGATCACTCGCATCGATACAAGGATCACAGCTTAATCCCCATATCCTGTTTGCCGGGTTATGCCTGGCTGGTATTTTG
GGTGACAGCCTTAATTACTGGATAGGTCAAGAATTCGGGCTAAAGGTTTTTACCCCGGAGAAGTTTCGCTTCCTTAAACA
GGAGCATCTTGATAAGACGCATGCCTTTTATCTCAAATACGGTGGCAAAACGATTATCATCGCGCGCTTTATCCCTATCA
TCCGTACTTTTGCTCCATTTGTGGCCGGTATTGGCACTATGCCTTATCGCACCTTTCTTACTTACAACATCATTGGTGCT
GCGCTGTGGGTCGGGATATTTGTTTACGCTGGATTTTATTTTGGGCAACTCCCATTTATACAAAGAAACTTCAAGCTGGT
TATTGTTGCGATCATTATTTTATCGATCATCCCACCTGTAATTGAATACCTTAAACATCGCTACGGAAAGAACAAACCAG
ACCAAGGTTGA

Upstream 100 bases:

>100_bases
AGATTTATTCATGCTTCGAGGTAATCTGGTGCGGTATTCTTGCACTGATTGTTACAAACCGTAACCTCGTTCTCCACAAC
AAACCCATATCCCCCTGCCC

Downstream 100 bases:

>100_bases
CCTGCCCTGTTCAAACATGCCGGATAATGAGGACTTCATGATGCCATCCGTCGGCTGGAATTCCCCAGTAGAGAAGGCAG
AATAACAAGCGTACAGATCA

Product: DedA family protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MFLIDFIIHIDSHLRELVLEYGIWVNGILFLIIFCETGLVVFPFLPGDSLLFAAGSLASIQGSQLNPHILFAGLCLAGIL
GDSLNYWIGQEFGLKVFTPEKFRFLKQEHLDKTHAFYLKYGGKTIIIARFIPIIRTFAPFVAGIGTMPYRTFLTYNIIGA
ALWVGIFVYAGFYFGQLPFIQRNFKLVIVAIIILSIIPPVIEYLKHRYGKNKPDQG

Sequences:

>Translated_216_residues
MFLIDFIIHIDSHLRELVLEYGIWVNGILFLIIFCETGLVVFPFLPGDSLLFAAGSLASIQGSQLNPHILFAGLCLAGIL
GDSLNYWIGQEFGLKVFTPEKFRFLKQEHLDKTHAFYLKYGGKTIIIARFIPIIRTFAPFVAGIGTMPYRTFLTYNIIGA
ALWVGIFVYAGFYFGQLPFIQRNFKLVIVAIIILSIIPPVIEYLKHRYGKNKPDQG
>Mature_216_residues
MFLIDFIIHIDSHLRELVLEYGIWVNGILFLIIFCETGLVVFPFLPGDSLLFAAGSLASIQGSQLNPHILFAGLCLAGIL
GDSLNYWIGQEFGLKVFTPEKFRFLKQEHLDKTHAFYLKYGGKTIIIARFIPIIRTFAPFVAGIGTMPYRTFLTYNIIGA
ALWVGIFVYAGFYFGQLPFIQRNFKLVIVAIIILSIIPPVIEYLKHRYGKNKPDQG

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=205, Percent_Identity=60.9756097560976, Blast_Score=265, Evalue=2e-72,
Organism=Escherichia coli, GI1789384, Length=196, Percent_Identity=29.5918367346939, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI1789481, Length=151, Percent_Identity=31.7880794701987, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1786252, Length=136, Percent_Identity=33.0882352941176, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24438; Mature: 24438

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLIDFIIHIDSHLRELVLEYGIWVNGILFLIIFCETGLVVFPFLPGDSLLFAAGSLASI
CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCHHHC
QGSQLNPHILFAGLCLAGILGDSLNYWIGQEFGLKVFTPEKFRFLKQEHLDKTHAFYLKY
CCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEECHHHHHHHHHHHCCHHHEEEEEE
GGKTIIIARFIPIIRTFAPFVAGIGTMPYRTFLTYNIIGAALWVGIFVYAGFYFGQLPFI
CCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
QRNFKLVIVAIIILSIIPPVIEYLKHRYGKNKPDQG
HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFLIDFIIHIDSHLRELVLEYGIWVNGILFLIIFCETGLVVFPFLPGDSLLFAAGSLASI
CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCHHHC
QGSQLNPHILFAGLCLAGILGDSLNYWIGQEFGLKVFTPEKFRFLKQEHLDKTHAFYLKY
CCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEECHHHHHHHHHHHCCHHHEEEEEE
GGKTIIIARFIPIIRTFAPFVAGIGTMPYRTFLTYNIIGAALWVGIFVYAGFYFGQLPFI
CCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
QRNFKLVIVAIIILSIIPPVIEYLKHRYGKNKPDQG
HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]