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The map label for this gene is yrbD [C]

Identifier: 114330859

GI number: 114330859

Start: 871143

End: 871622

Strand: Direct

Name: yrbD [C]

Synonym: Neut_0853

Alternate gene names: 114330859

Gene position: 871143-871622 (Clockwise)

Preceding gene: 114330858

Following gene: 114330860

Centisome position: 32.74

GC content: 46.04

Gene sequence:

>480_bases
ATGCAACGTACCATGATGGATTTTTGGGTGGGCCTGTTCGTCATGGCGGGGATTGGTGCATTGCTGATTCTGGGGTTAAA
AGTAGGTAACCTTACGGATTTTCAGACAGATAAAAGCTATGTACTGGTGGGTAATTTCGAGAATATCGGTGGTTTAAAGG
TACGTGCGCCCGTAAAAAGTGCGGGTGTAGTGGTGGGCCGTGTCACAGATATTCAGTTTGATGTGCAGACCTATGATGCG
GTGGTAACCATGAAGGTGGATACGCGCTATCGGTTTCCTAAGGATACATTTGCTAGCATTTTGACCTCAGGGTTGTTGGG
GGAACAGTATATCGGATTATTACCAGGTGGGGATGAGGAGATGCTCGCAGATGGTGAAAAGATTATGAAAACCAACTCGG
CGATTGTGTTGGAGGAGATGATCGGGCGCTTCTTGTTCGATAAGGCTTCAGAGAAAAAAAATTTGGATCCGGAAATTTGA

Upstream 100 bases:

>100_bases
GGGTGTCGGGCGCAACGACCCGTACAGTGGTTACTTCCGCGCTGGCAATTTTGGGTCTGGATTTTGTTTTAACTGCATTT
ATGTTCAGAGGGGTAAGCTG

Downstream 100 bases:

>100_bases
AACAGGCGATAAAACATGAAATTATTATTTAATAAGATTATTTTTCTGGCGTTACTGGTTATTGCGCTCCCTGCAGCAGC
ACAGGACTCTTCACCTGATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MQRTMMDFWVGLFVMAGIGALLILGLKVGNLTDFQTDKSYVLVGNFENIGGLKVRAPVKSAGVVVGRVTDIQFDVQTYDA
VVTMKVDTRYRFPKDTFASILTSGLLGEQYIGLLPGGDEEMLADGEKIMKTNSAIVLEEMIGRFLFDKASEKKNLDPEI

Sequences:

>Translated_159_residues
MQRTMMDFWVGLFVMAGIGALLILGLKVGNLTDFQTDKSYVLVGNFENIGGLKVRAPVKSAGVVVGRVTDIQFDVQTYDA
VVTMKVDTRYRFPKDTFASILTSGLLGEQYIGLLPGGDEEMLADGEKIMKTNSAIVLEEMIGRFLFDKASEKKNLDPEI
>Mature_159_residues
MQRTMMDFWVGLFVMAGIGALLILGLKVGNLTDFQTDKSYVLVGNFENIGGLKVRAPVKSAGVVVGRVTDIQFDVQTYDA
VVTMKVDTRYRFPKDTFASILTSGLLGEQYIGLLPGGDEEMLADGEKIMKTNSAIVLEEMIGRFLFDKASEKKNLDPEI

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=161, Percent_Identity=45.9627329192547, Blast_Score=127, Evalue=5e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 17506; Mature: 17506

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRTMMDFWVGLFVMAGIGALLILGLKVGNLTDFQTDKSYVLVGNFENIGGLKVRAPVKS
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCC
AGVVVGRVTDIQFDVQTYDAVVTMKVDTRYRFPKDTFASILTSGLLGEQYIGLLPGGDEE
CCEEEEEEEEEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHEEECCCCCHH
MLADGEKIMKTNSAIVLEEMIGRFLFDKASEKKNLDPEI
HHHCCHHHHHCCCEEHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MQRTMMDFWVGLFVMAGIGALLILGLKVGNLTDFQTDKSYVLVGNFENIGGLKVRAPVKS
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCC
AGVVVGRVTDIQFDVQTYDAVVTMKVDTRYRFPKDTFASILTSGLLGEQYIGLLPGGDEE
CCEEEEEEEEEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHEEECCCCCHH
MLADGEKIMKTNSAIVLEEMIGRFLFDKASEKKNLDPEI
HHHCCHHHHHCCCEEHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]