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The map label for this gene is radC [C]

Identifier: 114330795

GI number: 114330795

Start: 799431

End: 800105

Strand: Reverse

Name: radC [C]

Synonym: Neut_0782

Alternate gene names: 114330795

Gene position: 800105-799431 (Counterclockwise)

Preceding gene: 114330799

Following gene: 114330794

Centisome position: 30.07

GC content: 47.85

Gene sequence:

>675_bases
ATGGCAATCTCAGACTGGCCGGAAGCCGAACGTCCACGGGAAAAGTTAATCCAGAAAGGTGCAACCGTACTTTCCGATGC
GGAATTACTGGCTATTTTTCTGCGTACCGGGATTACCGGAAAAAGTGCAGTTGAGCTGGCACGCAATCTGTTGACTCATT
TTGGCAGCCTGACAAAACTATGTGCAGCGAATTTACACGAATTCAGTAAATTGCCTGGAATGGGGCCGGCAAAATTTGCA
CAATTGCAGGCAGTTATGGAAATGGCAAGACGTGCACTGGCAGAAGAGCTCAAAAGCGGTGACATTATGGATTCACCACA
GTCTGTGCGCAGTTATCTCCGTCTTAGCCTGGGAGGAAAGCCACATGAAGTTTTTGTCGGTATTTTTCTGGATGCCAGAC
ACCGAACCATAATGATCGAAGAACTATTTCGCGGTACACTCACCCAAGCCAGTGTTTATCCACGTGAAGTAGTCAAGCGC
GCCCTGTATCATAACGCAGCCGCCATGATTTTTGCGCACAATCACCCTTCCGGAGTTGCCGAACCCAGCAGGGCAGATGA
AATGTTGACTCAATCTCTCAAACAGGCGCTTGCGCTGGTGGATGTGAAAGTGCTTGATCACTTTGTAATTGGCAATAATG
AAACCGTATCATTTGCAGAACGGGGCTTGATTTAA

Upstream 100 bases:

>100_bases
TTTTTGAATAAAAACAAATAGCTATTCATTTTTACCCAGAATGACCGTTCATTCGTATCACTAAATTAAACACACTCATT
TTTACAGGATTCATTTAAAT

Downstream 100 bases:

>100_bases
ATTGAAAAAACATATCTCTACAAGCTATAATGCAAGGCTTCAGTATTTTAATGACAGGAGTTAGTAACATGGCGCGTGTA
TGTCAAGTCACGGGAAAGCG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MAISDWPEAERPREKLIQKGATVLSDAELLAIFLRTGITGKSAVELARNLLTHFGSLTKLCAANLHEFSKLPGMGPAKFA
QLQAVMEMARRALAEELKSGDIMDSPQSVRSYLRLSLGGKPHEVFVGIFLDARHRTIMIEELFRGTLTQASVYPREVVKR
ALYHNAAAMIFAHNHPSGVAEPSRADEMLTQSLKQALALVDVKVLDHFVIGNNETVSFAERGLI

Sequences:

>Translated_224_residues
MAISDWPEAERPREKLIQKGATVLSDAELLAIFLRTGITGKSAVELARNLLTHFGSLTKLCAANLHEFSKLPGMGPAKFA
QLQAVMEMARRALAEELKSGDIMDSPQSVRSYLRLSLGGKPHEVFVGIFLDARHRTIMIEELFRGTLTQASVYPREVVKR
ALYHNAAAMIFAHNHPSGVAEPSRADEMLTQSLKQALALVDVKVLDHFVIGNNETVSFAERGLI
>Mature_223_residues
AISDWPEAERPREKLIQKGATVLSDAELLAIFLRTGITGKSAVELARNLLTHFGSLTKLCAANLHEFSKLPGMGPAKFAQ
LQAVMEMARRALAEELKSGDIMDSPQSVRSYLRLSLGGKPHEVFVGIFLDARHRTIMIEELFRGTLTQASVYPREVVKRA
LYHNAAAMIFAHNHPSGVAEPSRADEMLTQSLKQALALVDVKVLDHFVIGNNETVSFAERGLI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=46.9483568075117, Blast_Score=210, Evalue=6e-56,
Organism=Escherichia coli, GI1788312, Length=151, Percent_Identity=43.7086092715232, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI2367100, Length=160, Percent_Identity=46.25, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1788997, Length=127, Percent_Identity=48.0314960629921, Blast_Score=129, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 24675; Mature: 24544

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISDWPEAERPREKLIQKGATVLSDAELLAIFLRTGITGKSAVELARNLLTHFGSLTKL
CCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
CAANLHEFSKLPGMGPAKFAQLQAVMEMARRALAEELKSGDIMDSPQSVRSYLRLSLGGK
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
PHEVFVGIFLDARHRTIMIEELFRGTLTQASVYPREVVKRALYHNAAAMIFAHNHPSGVA
CHHEEEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEECCCCCCC
EPSRADEMLTQSLKQALALVDVKVLDHFVIGNNETVSFAERGLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCC
>Mature Secondary Structure 
AISDWPEAERPREKLIQKGATVLSDAELLAIFLRTGITGKSAVELARNLLTHFGSLTKL
CCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
CAANLHEFSKLPGMGPAKFAQLQAVMEMARRALAEELKSGDIMDSPQSVRSYLRLSLGGK
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
PHEVFVGIFLDARHRTIMIEELFRGTLTQASVYPREVVKRALYHNAAAMIFAHNHPSGVA
CHHEEEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEECCCCCCC
EPSRADEMLTQSLKQALALVDVKVLDHFVIGNNETVSFAERGLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12700255 [H]