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The map label for this gene is yncD [H]

Identifier: 114330736

GI number: 114330736

Start: 732301

End: 734430

Strand: Direct

Name: yncD [H]

Synonym: Neut_0721

Alternate gene names: 114330736

Gene position: 732301-734430 (Clockwise)

Preceding gene: 114330735

Following gene: 114330737

Centisome position: 27.52

GC content: 50.94

Gene sequence:

>2130_bases
ATGAAAGGCAGAAAAATCAAACAAAAACAAAAATGGGGATTGGGAGTCGAAAAAATCGGTTACGGCAAGTCTCTAATGCC
ATTGACGGTTGCGGTAACCGGGGTGCTGGCAGCTGTTGCACCCATCTGGGTACAGGCGCAAAGTACGGATGAATCGATAC
AACTGAAAACAATCCAGGTGATAGCACCAGAGATAGAGCCAGCGATCACGGTACAGAGCTTGCCAGAAGCAAAACGTGCC
ATGCGCCGGGTGCCGGGTGGCGCCAATGTGGTTGATAGCGAAACGTATGCCACGGGCCGTGCTTCAACAGTGCAGGATGC
GCTGGGGTATTCGCCTGGCGTATTTGTCCAGTCTCGTGCCGGTGCTGAAGAGTCCCGCCTGTCGATTCGTGGCTCAGGTA
TACAACGCACATTCCATTTGCGCGGCATCAAGATTTTGCAGGATGGTTCACGGCTGAATCTGGCCGATGGCGGGGCGGAT
TTTCAGGCAATCGAGCCCTTGGCTACCCGCTATATTGAAGTGTTCCGGGGAGGTAATGCACTGCAGTATGGATCAACCAT
GTTGGGAGGCGCGATCAATTTCGTTACGCCGACTGGTTACGATGCGGAGCGTTTCCGCGCGCGGGGGGAGGCGGGTAGTT
TTGGTTATAACCGCCTGATGGCTTCTTCTGGTGGCGTGCATGGTTCGCTGGATTATTTTGCCAGTGTTTCCCGTTACAGT
CAGGATAGTTTTCGTGATTGGGCTGCTACCGATAACTGGCGTATGTTCAGTAATGCGGGATACCGTATCACCCCCGATCT
GGAAACACGTTTTTACTTGACCTATGTTAAATCCGACTCGCAACTGCCAGGCAATCTGACCAAAGCGCAATTAAAATCTG
ATCCCAGGCAGGCGAATGCGTTTAGTCTGTTTGGACGACAAAAACGTGACATTGATCTTATCCGGGTGGCTAACCGTACC
GTACTCAAACTGGGGAACAGCCAGCAACTGGAATTTTCCGGATTCTACTCACACAAGAATCTGTGGCATCCCATTTACCA
GGTGCTATCCCAACCCACCAATGATTATGGCGTGGGATTACGCTATATCAATGAAATGCCGATTGCGAGTTATCGTAACC
GTTTTGTGCTGGGTTTCGAACCGAGCTGGGGCAATGTCATGGATAACCGTTTCAAGAATGATGGCGGTAATGCGGGTGCG
CGCACTGCCAAATTTGATCAACATGCCAGCAGCTATGTTGTTTATGGAGAAAATCAGTTTTATTTGCTGCCGGAACTGTC
GTTGATTGCTGGCGCACAATATACTTACACGACACGCAAACAAAAGGATCTGTTCATGGCCGGCGGGGTGGATCAGAGTA
AGAGCAAAAACTATCAGCGCTTCACTCCCAAGGCGGGGCTAATTTATGAATTGAATCCAGATGTGCAATTTTTCAGTAAT
GTTAGCACCAGTTTTGAGCCACCCAGTTTTGCCGAGTTGACCAGCGGACCAGTTCAGGCACCGACATTTGCTAAAGCGCA
GCGTGCCATTACGTTTGAGGTAGGCAGCCGGGGCCGGTTATTTAATATGGCTGAGTGGGATGTGGCACTGTACCGTGCGC
ATGTGCGCAATGAATTGCTTGCGCTGGTGGATCCTGCTACCAGCTCCCCAATAGGTACGGCCAACGCAGATAAGACCGTG
CATCAGGGGATTGAACTAGGTTTGGATGTGGAACTGGCAAAAATGCTTTACCTGCGCCAGATGTATATGTTCAGCGATTT
CAAATTTGATAAGGATGCCGTTTTCGGCAATAACCAGCTGGCCGGTATTCCGCGTCATTTCTATAAAGCCGAGCTGACCT
ATCGCCACGCTGACGGTTACTATATTGGTCCGAATGTGGAATGGTCGCCGCAGAAGTATTACGTGGATCATGCCAATACG
CTCTCGGCTGATTCCTACGCACTGCTGGGCTTTAAAATTGGCAAACGGAGCAAAAGCGGATTCTCCTGGTTTGCCGAGGC
ACGCAATCTGACCGATCGCAAGTATGCCGCTACTACGGGCGTAGTGGAGAATGCAAGAGGTATCGATCAGGCCCAATTCC
TGCCGGGAGACGGGCGCTCCTTCTTTGCCGGTCTGGAATATCGAATGTAG

Upstream 100 bases:

>100_bases
CTTCTAAAATGGGTTCCCGGTTGAATTTTACGCTTCATTCCGCACAACCAGATTTTTAGGGGTATCCATCAGTTTTAAAG
CTTTCAAAACAGGGAAAAAT

Downstream 100 bases:

>100_bases
CATATTCATTCTTCCTGCTGGCCAGTTCGGCTGGCAGGTTGGTATTTAACTTAAATGGAGTGAAAATGTCGATTAAACAT
CTCATTACAGCAATCTTTAT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 709; Mature: 709

Protein sequence:

>709_residues
MKGRKIKQKQKWGLGVEKIGYGKSLMPLTVAVTGVLAAVAPIWVQAQSTDESIQLKTIQVIAPEIEPAITVQSLPEAKRA
MRRVPGGANVVDSETYATGRASTVQDALGYSPGVFVQSRAGAEESRLSIRGSGIQRTFHLRGIKILQDGSRLNLADGGAD
FQAIEPLATRYIEVFRGGNALQYGSTMLGGAINFVTPTGYDAERFRARGEAGSFGYNRLMASSGGVHGSLDYFASVSRYS
QDSFRDWAATDNWRMFSNAGYRITPDLETRFYLTYVKSDSQLPGNLTKAQLKSDPRQANAFSLFGRQKRDIDLIRVANRT
VLKLGNSQQLEFSGFYSHKNLWHPIYQVLSQPTNDYGVGLRYINEMPIASYRNRFVLGFEPSWGNVMDNRFKNDGGNAGA
RTAKFDQHASSYVVYGENQFYLLPELSLIAGAQYTYTTRKQKDLFMAGGVDQSKSKNYQRFTPKAGLIYELNPDVQFFSN
VSTSFEPPSFAELTSGPVQAPTFAKAQRAITFEVGSRGRLFNMAEWDVALYRAHVRNELLALVDPATSSPIGTANADKTV
HQGIELGLDVELAKMLYLRQMYMFSDFKFDKDAVFGNNQLAGIPRHFYKAELTYRHADGYYIGPNVEWSPQKYYVDHANT
LSADSYALLGFKIGKRSKSGFSWFAEARNLTDRKYAATTGVVENARGIDQAQFLPGDGRSFFAGLEYRM

Sequences:

>Translated_709_residues
MKGRKIKQKQKWGLGVEKIGYGKSLMPLTVAVTGVLAAVAPIWVQAQSTDESIQLKTIQVIAPEIEPAITVQSLPEAKRA
MRRVPGGANVVDSETYATGRASTVQDALGYSPGVFVQSRAGAEESRLSIRGSGIQRTFHLRGIKILQDGSRLNLADGGAD
FQAIEPLATRYIEVFRGGNALQYGSTMLGGAINFVTPTGYDAERFRARGEAGSFGYNRLMASSGGVHGSLDYFASVSRYS
QDSFRDWAATDNWRMFSNAGYRITPDLETRFYLTYVKSDSQLPGNLTKAQLKSDPRQANAFSLFGRQKRDIDLIRVANRT
VLKLGNSQQLEFSGFYSHKNLWHPIYQVLSQPTNDYGVGLRYINEMPIASYRNRFVLGFEPSWGNVMDNRFKNDGGNAGA
RTAKFDQHASSYVVYGENQFYLLPELSLIAGAQYTYTTRKQKDLFMAGGVDQSKSKNYQRFTPKAGLIYELNPDVQFFSN
VSTSFEPPSFAELTSGPVQAPTFAKAQRAITFEVGSRGRLFNMAEWDVALYRAHVRNELLALVDPATSSPIGTANADKTV
HQGIELGLDVELAKMLYLRQMYMFSDFKFDKDAVFGNNQLAGIPRHFYKAELTYRHADGYYIGPNVEWSPQKYYVDHANT
LSADSYALLGFKIGKRSKSGFSWFAEARNLTDRKYAATTGVVENARGIDQAQFLPGDGRSFFAGLEYRM
>Mature_709_residues
MKGRKIKQKQKWGLGVEKIGYGKSLMPLTVAVTGVLAAVAPIWVQAQSTDESIQLKTIQVIAPEIEPAITVQSLPEAKRA
MRRVPGGANVVDSETYATGRASTVQDALGYSPGVFVQSRAGAEESRLSIRGSGIQRTFHLRGIKILQDGSRLNLADGGAD
FQAIEPLATRYIEVFRGGNALQYGSTMLGGAINFVTPTGYDAERFRARGEAGSFGYNRLMASSGGVHGSLDYFASVSRYS
QDSFRDWAATDNWRMFSNAGYRITPDLETRFYLTYVKSDSQLPGNLTKAQLKSDPRQANAFSLFGRQKRDIDLIRVANRT
VLKLGNSQQLEFSGFYSHKNLWHPIYQVLSQPTNDYGVGLRYINEMPIASYRNRFVLGFEPSWGNVMDNRFKNDGGNAGA
RTAKFDQHASSYVVYGENQFYLLPELSLIAGAQYTYTTRKQKDLFMAGGVDQSKSKNYQRFTPKAGLIYELNPDVQFFSN
VSTSFEPPSFAELTSGPVQAPTFAKAQRAITFEVGSRGRLFNMAEWDVALYRAHVRNELLALVDPATSSPIGTANADKTV
HQGIELGLDVELAKMLYLRQMYMFSDFKFDKDAVFGNNQLAGIPRHFYKAELTYRHADGYYIGPNVEWSPQKYYVDHANT
LSADSYALLGFKIGKRSKSGFSWFAEARNLTDRKYAATTGVVENARGIDQAQFLPGDGRSFFAGLEYRM

Specific function: Probable receptor, tonB-dependent [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=257, Percent_Identity=29.5719844357977, Blast_Score=91, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 78851; Mature: 78851

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGRKIKQKQKWGLGVEKIGYGKSLMPLTVAVTGVLAAVAPIWVQAQSTDESIQLKTIQV
CCCCCCCHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEEEEE
IAPEIEPAITVQSLPEAKRAMRRVPGGANVVDSETYATGRASTVQDALGYSPGVFVQSRA
ECCCCCCEEEECCCHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHCCCCCEEEEECC
GAEESRLSIRGSGIQRTFHLRGIKILQDGSRLNLADGGADFQAIEPLATRYIEVFRGGNA
CCCCCEEEEECCCCEEEEEECCEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCE
LQYGSTMLGGAINFVTPTGYDAERFRARGEAGSFGYNRLMASSGGVHGSLDYFASVSRYS
EECCCHHHCCEEEEECCCCCCHHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHC
QDSFRDWAATDNWRMFSNAGYRITPDLETRFYLTYVKSDSQLPGNLTKAQLKSDPRQANA
CHHHHCCCCCCCCEEECCCCCEECCCCCCEEEEEEEECCCCCCCCCHHHHHCCCCCCCCH
FSLFGRQKRDIDLIRVANRTVLKLGNSQQLEFSGFYSHKNLWHPIYQVLSQPTNDYGVGL
HHHCCCCCCCEEEEEECCCEEEECCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCE
RYINEMPIASYRNRFVLGFEPSWGNVMDNRFKNDGGNAGARTAKFDQHASSYVVYGENQF
EEECCCCCHHHCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCEE
YLLPELSLIAGAQYTYTTRKQKDLFMAGGVDQSKSKNYQRFTPKAGLIYELNPDVQFFSN
EECCCHHHHCCCEEEEECCCCCCEEEECCCCCCCCCCCEEECCCCCEEEEECCCHHHHHC
VSTSFEPPSFAELTSGPVQAPTFAKAQRAITFEVGSRGRLFNMAEWDVALYRAHVRNELL
CCCCCCCCCHHHHCCCCCCCCCHHHHCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHCEE
ALVDPATSSPIGTANADKTVHQGIELGLDVELAKMLYLRQMYMFSDFKFDKDAVFGNNQL
EEECCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCC
AGIPRHFYKAELTYRHADGYYIGPNVEWSPQKYYVDHANTLSADSYALLGFKIGKRSKSG
CCCCHHHEEEEEEEEECCCEEECCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCC
FSWFAEARNLTDRKYAATTGVVENARGIDQAQFLPGDGRSFFAGLEYRM
HHHHHHHCCCCCCHHHHHHCHHHCCCCCCHHHCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MKGRKIKQKQKWGLGVEKIGYGKSLMPLTVAVTGVLAAVAPIWVQAQSTDESIQLKTIQV
CCCCCCCHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEEEEE
IAPEIEPAITVQSLPEAKRAMRRVPGGANVVDSETYATGRASTVQDALGYSPGVFVQSRA
ECCCCCCEEEECCCHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHCCCCCEEEEECC
GAEESRLSIRGSGIQRTFHLRGIKILQDGSRLNLADGGADFQAIEPLATRYIEVFRGGNA
CCCCCEEEEECCCCEEEEEECCEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCE
LQYGSTMLGGAINFVTPTGYDAERFRARGEAGSFGYNRLMASSGGVHGSLDYFASVSRYS
EECCCHHHCCEEEEECCCCCCHHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHC
QDSFRDWAATDNWRMFSNAGYRITPDLETRFYLTYVKSDSQLPGNLTKAQLKSDPRQANA
CHHHHCCCCCCCCEEECCCCCEECCCCCCEEEEEEEECCCCCCCCCHHHHHCCCCCCCCH
FSLFGRQKRDIDLIRVANRTVLKLGNSQQLEFSGFYSHKNLWHPIYQVLSQPTNDYGVGL
HHHCCCCCCCEEEEEECCCEEEECCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCE
RYINEMPIASYRNRFVLGFEPSWGNVMDNRFKNDGGNAGARTAKFDQHASSYVVYGENQF
EEECCCCCHHHCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCEE
YLLPELSLIAGAQYTYTTRKQKDLFMAGGVDQSKSKNYQRFTPKAGLIYELNPDVQFFSN
EECCCHHHHCCCEEEEECCCCCCEEEECCCCCCCCCCCEEECCCCCEEEEECCCHHHHHC
VSTSFEPPSFAELTSGPVQAPTFAKAQRAITFEVGSRGRLFNMAEWDVALYRAHVRNELL
CCCCCCCCCHHHHCCCCCCCCCHHHHCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHCEE
ALVDPATSSPIGTANADKTVHQGIELGLDVELAKMLYLRQMYMFSDFKFDKDAVFGNNQL
EEECCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCC
AGIPRHFYKAELTYRHADGYYIGPNVEWSPQKYYVDHANTLSADSYALLGFKIGKRSKSG
CCCCHHHEEEEEEEEECCCEEECCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCC
FSWFAEARNLTDRKYAATTGVVENARGIDQAQFLPGDGRSFFAGLEYRM
HHHHHHHCCCCCCHHHHHHCHHHCCCCCCHHHCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]