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The map label for this gene is ihfB

Identifier: 114330422

GI number: 114330422

Start: 408662

End: 408979

Strand: Direct

Name: ihfB

Synonym: Neut_0401

Alternate gene names: 114330422

Gene position: 408662-408979 (Clockwise)

Preceding gene: 114330421

Following gene: 114330423

Centisome position: 15.36

GC content: 46.86

Gene sequence:

>318_bases
ATGACGAAATCCGAACTGATTTCCAAGCTGGCGGAACGCTTTCCTCAGCTGCTGGCAAAGGATGCAGAATTAGTCGTCAA
GATTATTCTGGATGCAATGGCGAAAAGCCTTGCCAGAGGGGAACGTATCGAGATTCGTGGATTTGGCAGTTTCGATCTAA
ATTACAGGCCTTCACGTGTCGGGCGCAACCCTAAATCAGGTGAAAAGGTTCATGTGCCGGAGAAATATGTTCCTCACTTC
AAGGCAGGTAAAAAAATGCGAGAACTGATTGATTCCAGCCATAAACAGCATAACCTGCTTGATCAGGCTACAGGCTAG

Upstream 100 bases:

>100_bases
ATCGCTGGCTCCATCTCCAGCCAGTGCGGGTACTACTAATCTGGGTGCATTACTTAAAGCCAAGATTGATAGTAAATCTT
CAGAAGAATAAAAGCTGGCC

Downstream 100 bases:

>100_bases
AAATCCGTGTCTCTTGAAAATAACGTTGCACCAGAAGAAAGCGTGTCTCATTTCTTTCCGATTTTTGTTGCGTAAATCTA
CAATATGCTCGGAAATCAGT

Product: integration host factor, beta subunit

Products: NA

Alternate protein names: IHF-beta

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRVGRNPKSGEKVHVPEKYVPHF
KAGKKMRELIDSSHKQHNLLDQATG

Sequences:

>Translated_105_residues
MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRVGRNPKSGEKVHVPEKYVPHF
KAGKKMRELIDSSHKQHNLLDQATG
>Mature_104_residues
TKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRVGRNPKSGEKVHVPEKYVPHFK
AGKKMRELIDSSHKQHNLLDQATG

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1787141, Length=88, Percent_Identity=60.2272727272727, Blast_Score=107, Evalue=1e-25,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1788005, Length=93, Percent_Identity=31.1827956989247, Blast_Score=62, Evalue=7e-12,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=31.8681318681319, Blast_Score=62, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFB_NITEC (Q0AIZ2)

Other databases:

- EMBL:   CP000450
- RefSeq:   YP_746644.1
- ProteinModelPortal:   Q0AIZ2
- SMR:   Q0AIZ2
- STRING:   Q0AIZ2
- GeneID:   4273463
- GenomeReviews:   CP000450_GR
- KEGG:   net:Neut_0401
- NMPDR:   fig|335283.3.peg.1944
- eggNOG:   COG0776
- HOGENOM:   HBG705085
- OMA:   PEKYVPH
- PhylomeDB:   Q0AIZ2
- ProtClustDB:   CLSK586039
- BioCyc:   NEUT335283:NEUT_0401-MONOMER
- GO:   GO:0005694
- GO:   GO:0006350
- HAMAP:   MF_00381
- InterPro:   IPR000119
- InterPro:   IPR010992
- InterPro:   IPR005685
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00988

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11869; Mature: 11738

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHC
GRNPKSGEKVHVPEKYVPHFKAGKKMRELIDSSHKQHNLLDQATG
CCCCCCCCEEECCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure 
TKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHC
GRNPKSGEKVHVPEKYVPHFKAGKKMRELIDSSHKQHNLLDQATG
CCCCCCCCEEECCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA