Click here to switch to the map view.

The map label for this gene is ybgF [C]

Identifier: 114330318

GI number: 114330318

Start: 300064

End: 300885

Strand: Direct

Name: ybgF [C]

Synonym: Neut_0291

Alternate gene names: 114330318

Gene position: 300064-300885 (Clockwise)

Preceding gene: 114330317

Following gene: 114330319

Centisome position: 11.28

GC content: 47.2

Gene sequence:

>822_bases
ATGTTTTTGCGCGCTTTCTTGCCGTTACTTTTGCTTCTTGGTTGTAGCGTTGCACAGGCTGCACTGTTTGGTGATTCTGA
AACCCGTGAACAGTTGGATGCGCTGCGCACAAAGGTATTGGAAATGGAAGCGCGCATGCAGCATACGGAAGAAGTTTTTA
TGGGCCAATCTCTAATCGAATTGCATTCCCAGGCAGAAGCCCTCAAGGAAGAAATGGGAAAACTACGGGGGAAGATAGAG
GTACTTGAGGATGAGAATCGGTCATTGCGCAAGCAACAAAAGGATTTCTATCTGGACCTTGATAACCGACTGCGTCAGAT
TGAGCCTGGTTCAGCGAGCGTCTCTGTGCCGGACTCCGAAATCTCTGTCCCGGCATCAGAACCGCCAGCTGCTGATATAA
AAAATACTACACCTCTCAAAGCGTCTGTGATTCTGCAATTACCGGATACAGTTCAGCGCAATCGCTATGATGCAGCCTAT
GCTTTGTTTAAGGATGGTGATTATTCCGGATCGATAGCCAGTTTTGAGAGTTTCTTGTCCCGGCATCCCCAATCTGCTCT
GGCACCTGCCGCAGCTTATTGGATTGGAAACGCACATTATGCAATGAGAAATTTTGACAAAGCGATTGCTGCGCAACAGC
GATTGATTGAAACGTATCCTGATAGTCCCAAAGTACCGGATGGGCTTCTTAATATGGCAAGCAGTCAGGTTGAAATCGGT
CAAAAAGCTGCTGCCAGAAAAACATTGGTAAATCTCATTACGAACTACCCTGGTACTGAGGCGGCAGAAAAGGCTAAGCG
TCGTTTGGGATCTCTCAAATAG

Upstream 100 bases:

>100_bases
CTGTCAGCCTGGGTGAAGAAAAACCGCGTGCTCTGGGGAGTGATGAGTCATCCTGGGCTGAGAACCGACGTACTGATATT
CTCTATCAAGGAGAGTATTA

Downstream 100 bases:

>100_bases
ACTTGACTGTCTATGTTGCTAAAATTTAGCACAACTTGTTCTACTCATTTTTAAATTCCTTTTGGCAAGCAGAGGGAATG
TTCCAGTCCCGTTAGGATCC

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MFLRAFLPLLLLLGCSVAQAALFGDSETREQLDALRTKVLEMEARMQHTEEVFMGQSLIELHSQAEALKEEMGKLRGKIE
VLEDENRSLRKQQKDFYLDLDNRLRQIEPGSASVSVPDSEISVPASEPPAADIKNTTPLKASVILQLPDTVQRNRYDAAY
ALFKDGDYSGSIASFESFLSRHPQSALAPAAAYWIGNAHYAMRNFDKAIAAQQRLIETYPDSPKVPDGLLNMASSQVEIG
QKAAARKTLVNLITNYPGTEAAEKAKRRLGSLK

Sequences:

>Translated_273_residues
MFLRAFLPLLLLLGCSVAQAALFGDSETREQLDALRTKVLEMEARMQHTEEVFMGQSLIELHSQAEALKEEMGKLRGKIE
VLEDENRSLRKQQKDFYLDLDNRLRQIEPGSASVSVPDSEISVPASEPPAADIKNTTPLKASVILQLPDTVQRNRYDAAY
ALFKDGDYSGSIASFESFLSRHPQSALAPAAAYWIGNAHYAMRNFDKAIAAQQRLIETYPDSPKVPDGLLNMASSQVEIG
QKAAARKTLVNLITNYPGTEAAEKAKRRLGSLK
>Mature_273_residues
MFLRAFLPLLLLLGCSVAQAALFGDSETREQLDALRTKVLEMEARMQHTEEVFMGQSLIELHSQAEALKEEMGKLRGKIE
VLEDENRSLRKQQKDFYLDLDNRLRQIEPGSASVSVPDSEISVPASEPPAADIKNTTPLKASVILQLPDTVQRNRYDAAY
ALFKDGDYSGSIASFESFLSRHPQSALAPAAAYWIGNAHYAMRNFDKAIAAQQRLIETYPDSPKVPDGLLNMASSQVEIG
QKAAARKTLVNLITNYPGTEAAEKAKRRLGSLK

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybgF [H]

Homologues:

Organism=Escherichia coli, GI1786963, Length=208, Percent_Identity=25.9615384615385, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30224; Mature: 30224

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLRAFLPLLLLLGCSVAQAALFGDSETREQLDALRTKVLEMEARMQHTEEVFMGQSLIE
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHSQAEALKEEMGKLRGKIEVLEDENRSLRKQQKDFYLDLDNRLRQIEPGSASVSVPDSE
HHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHEECHHHHHHHCCCCCCEEECCCCC
ISVPASEPPAADIKNTTPLKASVILQLPDTVQRNRYDAAYALFKDGDYSGSIASFESFLS
CCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHCCHHHHHHEEECCCCCCCHHHHHHHHH
RHPQSALAPAAAYWIGNAHYAMRNFDKAIAAQQRLIETYPDSPKVPDGLLNMASSQVEIG
HCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
QKAAARKTLVNLITNYPGTEAAEKAKRRLGSLK
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MFLRAFLPLLLLLGCSVAQAALFGDSETREQLDALRTKVLEMEARMQHTEEVFMGQSLIE
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHSQAEALKEEMGKLRGKIEVLEDENRSLRKQQKDFYLDLDNRLRQIEPGSASVSVPDSE
HHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHEECHHHHHHHCCCCCCEEECCCCC
ISVPASEPPAADIKNTTPLKASVILQLPDTVQRNRYDAAYALFKDGDYSGSIASFESFLS
CCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHCCHHHHHHEEECCCCCCCHHHHHHHHH
RHPQSALAPAAAYWIGNAHYAMRNFDKAIAAQQRLIETYPDSPKVPDGLLNMASSQVEIG
HCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
QKAAARKTLVNLITNYPGTEAAEKAKRRLGSLK
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]