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The map label for this gene is atpD1

Identifier: 114330304

GI number: 114330304

Start: 287282

End: 288664

Strand: Direct

Name: atpD1

Synonym: Neut_0277

Alternate gene names: 114330304

Gene position: 287282-288664 (Clockwise)

Preceding gene: 114330303

Following gene: 114330305

Centisome position: 10.8

GC content: 45.41

Gene sequence:

>1383_bases
ATGAGCCATCAAGGAAAGATCGTTCAATGCATTGGCGCGGTAATCGACGTGGAATTTGCATCAGAGGGAATACCAAAAGT
ATATGACGCTCTGGTAATGGAAGGGTCGGAGTTAACACTGGAAGTACAGCAGCAGTTGGGAGATGGAGTTGTTAGAACCA
TTGCACTTGGATCGTCAGATGGTCTGAGGCGAGGAATGATGGTTACCAATACCCAAAAGCAGATATCGGTTCCTGTTGGT
ACCAAGACGCTGGGGCGCATTATGGATGTCCTCGGTAGGCCCATTGATGAAATGGGAGAAATCGGTGCAGAATCATTCAT
GCCCATTCATCGGACTGCTCCTGCTTTTGATGAACTGTCAGCCTCGACGGAGCTGCTGGAAACTGGAATTAAAGTTATTG
ATTTGATTTGTCCTTTTGCCAAGGGAGGCAAGGTTGGGCTTTTCGGCGGTGCTGGTGTAGGAAAAACTGTCAACATGATG
GAGCTTATCCGTAATATCGCAATTGAGCATAGCGGATACTCGGTATTCGCTGGTGTGGGCGAGAGGACACGGGAAGGAAA
CGATTTCTATCATGAAATGAAAGATTCCAATGTATTGGACAAGGTGGCATTAGTTTATGGACAGATGAACGAGCCACCTG
GAAACCGTTTACGTGTTGCGCTAACAGGTTTGACAATGGCTGAAGCATTTCGCGATGAAGGGCGTGATGTCTTATTCTTT
GTAGACAATATTTATCGTTACACTCTGGCGGGGACGGAGGTTTCTGCATTATTAGGGCGTATGCCATCTGCAGTTGGATA
TCAGCCGACACTTGCAGAAGAAATGGGGCGTTTACAGGAAAGAATTACTTCTTCTAAAACGGGTTCAATTACGTCAATTC
AGGCTGTATATGTACCGGCTGATGACTTGACCGATCCGTCTCCGGCAACGACGTTTGGTCACCTTGACGCTACTGTAGTG
TTGTCGAGGGATATCGCTTCTCTTGGGATTTATCCTGCTGTTGATCCACTCGATTCGACTTCACGTCAATTAGATCCCCT
GGTTGTTGGCGAAGATCACTACAACACAGCGCGTGAAGTTCAGCAGACATTACAGCGTTACAAAGAGCTGCGTGACATCA
TTGCTATTTTAGGTATGGATGAACTTTCACCAGAAGATAAATTATCGGTTAGTCGCGCACGAAAAATACAAAGATTCCTG
TCGCAGCCATTTTTTGTTGCCGAAGTCTTTACAGGCTCACCCGGGAAATATGTTTCATTAAAAGAAACCATTAAGGGCTT
CAAAGGAATTATTAATGGTGAGTATGATGATATTCCCGAACAGGCTTTTTACATGGTGGGCGGAATTGAAGAAGTGCTAG
AGAAGGCTAAATCATTCCAATAA

Upstream 100 bases:

>100_bases
TAACAAATCTCGTCAGGCAGCTATTACCAAAGAACTTTCAGAAATCGTCGGCGGAGCAGCGGCTGTTTAAGTATTGTAAA
TTTGTATTTAGGGAAAAGTG

Downstream 100 bases:

>100_bases
TAAATATCTATTTTATAGGTAATCAATGGGTACGATATTCCATTTGGATATAGTGAGTGCAGAAGAATCGATTTATTCTG
GACCTGCAGAATTCATTGTT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 1; F-ATPase subunit beta 1

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MSHQGKIVQCIGAVIDVEFASEGIPKVYDALVMEGSELTLEVQQQLGDGVVRTIALGSSDGLRRGMMVTNTQKQISVPVG
TKTLGRIMDVLGRPIDEMGEIGAESFMPIHRTAPAFDELSASTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMM
ELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEAFRDEGRDVLFF
VDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSSKTGSITSIQAVYVPADDLTDPSPATTFGHLDATVV
LSRDIASLGIYPAVDPLDSTSRQLDPLVVGEDHYNTAREVQQTLQRYKELRDIIAILGMDELSPEDKLSVSRARKIQRFL
SQPFFVAEVFTGSPGKYVSLKETIKGFKGIINGEYDDIPEQAFYMVGGIEEVLEKAKSFQ

Sequences:

>Translated_460_residues
MSHQGKIVQCIGAVIDVEFASEGIPKVYDALVMEGSELTLEVQQQLGDGVVRTIALGSSDGLRRGMMVTNTQKQISVPVG
TKTLGRIMDVLGRPIDEMGEIGAESFMPIHRTAPAFDELSASTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMM
ELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEAFRDEGRDVLFF
VDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSSKTGSITSIQAVYVPADDLTDPSPATTFGHLDATVV
LSRDIASLGIYPAVDPLDSTSRQLDPLVVGEDHYNTAREVQQTLQRYKELRDIIAILGMDELSPEDKLSVSRARKIQRFL
SQPFFVAEVFTGSPGKYVSLKETIKGFKGIINGEYDDIPEQAFYMVGGIEEVLEKAKSFQ
>Mature_459_residues
SHQGKIVQCIGAVIDVEFASEGIPKVYDALVMEGSELTLEVQQQLGDGVVRTIALGSSDGLRRGMMVTNTQKQISVPVGT
KTLGRIMDVLGRPIDEMGEIGAESFMPIHRTAPAFDELSASTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMME
LIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEAFRDEGRDVLFFV
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSSKTGSITSIQAVYVPADDLTDPSPATTFGHLDATVVL
SRDIASLGIYPAVDPLDSTSRQLDPLVVGEDHYNTAREVQQTLQRYKELRDIIAILGMDELSPEDKLSVSRARKIQRFLS
QPFFVAEVFTGSPGKYVSLKETIKGFKGIINGEYDDIPEQAFYMVGGIEEVLEKAKSFQ

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=464, Percent_Identity=68.3189655172414, Blast_Score=630, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=318, Percent_Identity=27.9874213836478, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI19913428, Length=363, Percent_Identity=26.1707988980716, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI19913426, Length=404, Percent_Identity=24.7524752475248, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI50345984, Length=321, Percent_Identity=24.9221183800623, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI4757810, Length=321, Percent_Identity=24.9221183800623, Blast_Score=102, Evalue=9e-22,
Organism=Escherichia coli, GI1790170, Length=457, Percent_Identity=83.1509846827133, Blast_Score=771, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=329, Percent_Identity=31.0030395136778, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI1790172, Length=344, Percent_Identity=25.5813953488372, Blast_Score=111, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI25144756, Length=464, Percent_Identity=66.5948275862069, Blast_Score=615, Evalue=1e-176,
Organism=Caenorhabditis elegans, GI17565854, Length=324, Percent_Identity=28.0864197530864, Blast_Score=118, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI17510931, Length=349, Percent_Identity=26.0744985673352, Blast_Score=112, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17570191, Length=350, Percent_Identity=25.1428571428571, Blast_Score=106, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71988080, Length=303, Percent_Identity=25.0825082508251, Blast_Score=100, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI71988063, Length=303, Percent_Identity=25.0825082508251, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71988074, Length=307, Percent_Identity=23.4527687296417, Blast_Score=78, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6322581, Length=457, Percent_Identity=65.8643326039387, Blast_Score=607, Evalue=1e-174,
Organism=Saccharomyces cerevisiae, GI6319603, Length=400, Percent_Identity=27.75, Blast_Score=122, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6319370, Length=375, Percent_Identity=24.5333333333333, Blast_Score=104, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6320016, Length=256, Percent_Identity=26.171875, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24638766, Length=462, Percent_Identity=66.2337662337662, Blast_Score=607, Evalue=1e-174,
Organism=Drosophila melanogaster, GI28574560, Length=464, Percent_Identity=64.6551724137931, Blast_Score=590, Evalue=1e-169,
Organism=Drosophila melanogaster, GI20129479, Length=345, Percent_Identity=26.9565217391304, Blast_Score=116, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24583988, Length=365, Percent_Identity=26.3013698630137, Blast_Score=115, Evalue=9e-26,
Organism=Drosophila melanogaster, GI24583986, Length=365, Percent_Identity=26.3013698630137, Blast_Score=115, Evalue=9e-26,
Organism=Drosophila melanogaster, GI24583984, Length=365, Percent_Identity=26.3013698630137, Blast_Score=115, Evalue=9e-26,
Organism=Drosophila melanogaster, GI281361666, Length=402, Percent_Identity=25.8706467661692, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24646341, Length=402, Percent_Identity=25.8706467661692, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI17136796, Length=402, Percent_Identity=25.8706467661692, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24583992, Length=335, Percent_Identity=26.865671641791, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24658560, Length=344, Percent_Identity=25.2906976744186, Blast_Score=99, Evalue=9e-21,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=46.7391304347826, Blast_Score=80, Evalue=4e-15,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB1_NITEC (Q0AJB0)

Other databases:

- EMBL:   CP000450
- RefSeq:   YP_746526.1
- ProteinModelPortal:   Q0AJB0
- SMR:   Q0AJB0
- STRING:   Q0AJB0
- GeneID:   4272120
- GenomeReviews:   CP000450_GR
- KEGG:   net:Neut_0277
- NMPDR:   fig|335283.3.peg.2232
- eggNOG:   COG0055
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- PhylomeDB:   Q0AJB0
- ProtClustDB:   PRK09280
- BioCyc:   NEUT335283:NEUT_0277-MONOMER
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 50150; Mature: 50019

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHQGKIVQCIGAVIDVEFASEGIPKVYDALVMEGSELTLEVQQQLGDGVVRTIALGSSD
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCC
GLRRGMMVTNTQKQISVPVGTKTLGRIMDVLGRPIDEMGEIGAESFMPIHRTAPAFDELS
CCCCCCEEECCCCEEECCCCHHHHHHHHHHHCCCHHHHHHCCHHHCCCHHCCCCCHHHHH
ASTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG
HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCC
ERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEAFRDEGRDVLFF
CCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEE
VDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSSKTGSITSIQAVYVPA
EECHHHHEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
DDLTDPSPATTFGHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPLVVGEDHYNTAREV
CCCCCCCCCCEECCCCEEEEEEHHHHHHCCCCCCCCCCCCHHHCCCEEECCCCCCHHHHH
QQTLQRYKELRDIIAILGMDELSPEDKLSVSRARKIQRFLSQPFFVAEVFTGSPGKYVSL
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEH
KETIKGFKGIINGEYDDIPEQAFYMVGGIEEVLEKAKSFQ
HHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure 
SHQGKIVQCIGAVIDVEFASEGIPKVYDALVMEGSELTLEVQQQLGDGVVRTIALGSSD
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCC
GLRRGMMVTNTQKQISVPVGTKTLGRIMDVLGRPIDEMGEIGAESFMPIHRTAPAFDELS
CCCCCCEEECCCCEEECCCCHHHHHHHHHHHCCCHHHHHHCCHHHCCCHHCCCCCHHHHH
ASTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG
HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCC
ERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEAFRDEGRDVLFF
CCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEE
VDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSSKTGSITSIQAVYVPA
EECHHHHEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
DDLTDPSPATTFGHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPLVVGEDHYNTAREV
CCCCCCCCCCEECCCCEEEEEEHHHHHHCCCCCCCCCCCCHHHCCCEEECCCCCCHHHHH
QQTLQRYKELRDIIAILGMDELSPEDKLSVSRARKIQRFLSQPFFVAEVFTGSPGKYVSL
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEH
KETIKGFKGIINGEYDDIPEQAFYMVGGIEEVLEKAKSFQ
HHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA