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The map label for this gene is alpA [H]

Identifier: 113970028

GI number: 113970028

Start: 2003552

End: 2003767

Strand: Direct

Name: alpA [H]

Synonym: Shewmr4_1689

Alternate gene names: 113970028

Gene position: 2003552-2003767 (Clockwise)

Preceding gene: 113970027

Following gene: 113970029

Centisome position: 42.57

GC content: 40.28

Gene sequence:

>216_bases
ATGCTTGACAGTAATCCGAGTTATTCAATCGTTAGGCTTGCTAGTGTTATTAAGTTAACTGGACTATCACGGTCTACTAT
ATACGACAAACAAAACCCGAAATCTCCTCGATATGACCATACGTTCCCCCAAAAAGTATCACTTGGGCCTAGGGCTGTTG
GTTGGTATTTTGGCGAGATAGAATCATGGCTTAAATCAGTCAGAACTCAAAAGTAA

Upstream 100 bases:

>100_bases
ACTTTCGTAGGGGAGTGTTTTCTATCCCCACCCTCCCTTTTCCAATATCTTCAAAAAATCTTATAGTCACCTTAGAAATT
TACATGCTAAGGAGGCGATT

Downstream 100 bases:

>100_bases
TGTATAAGGAGACTTTATATGAAACGCACTGTCCCACGGATGAAAAATTTAGAGTTTGACGCGCCAGTTAACCAAGATTA
TTTCAGCGCTAAGTTTCCTA

Product: phage transcriptional regulator, AlpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 71; Mature: 71

Protein sequence:

>71_residues
MLDSNPSYSIVRLASVIKLTGLSRSTIYDKQNPKSPRYDHTFPQKVSLGPRAVGWYFGEIESWLKSVRTQK

Sequences:

>Translated_71_residues
MLDSNPSYSIVRLASVIKLTGLSRSTIYDKQNPKSPRYDHTFPQKVSLGPRAVGWYFGEIESWLKSVRTQK
>Mature_71_residues
MLDSNPSYSIVRLASVIKLTGLSRSTIYDKQNPKSPRYDHTFPQKVSLGPRAVGWYFGEIESWLKSVRTQK

Specific function: Positive regulator of the expression of the slpA gene [H]

COG id: COG3311

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788977, Length=63, Percent_Identity=52.3809523809524, Blast_Score=75, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010260 [H]

Pfam domain/function: PF05930 Phage_AlpA [H]

EC number: NA

Molecular weight: Translated: 8130; Mature: 8130

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDSNPSYSIVRLASVIKLTGLSRSTIYDKQNPKSPRYDHTFPQKVSLGPRAVGWYFGEI
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
ESWLKSVRTQK
HHHHHHHHCCC
>Mature Secondary Structure
MLDSNPSYSIVRLASVIKLTGLSRSTIYDKQNPKSPRYDHTFPQKVSLGPRAVGWYFGEI
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
ESWLKSVRTQK
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7511582; 9278503 [H]