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The map label for this gene is rnk [H]

Identifier: 113969979

GI number: 113969979

Start: 1942960

End: 1943367

Strand: Direct

Name: rnk [H]

Synonym: Shewmr4_1639

Alternate gene names: 113969979

Gene position: 1942960-1943367 (Clockwise)

Preceding gene: 113969978

Following gene: 113969980

Centisome position: 41.28

GC content: 50.25

Gene sequence:

>408_bases
GTGAAAACGCCAAATATTATTATTTCAGAAATCGATTTAGAAAGACTCGAGCGTCTGCTGGAGTCATTACCTGCGAACGC
CTTTCCGGGACGCACGGCATTGGAGGCGGAACTCGACCGAGCAGACATTGTGCCCGCCGCGCAGATGCCTGGTAATGTGG
TGACGATGAATTCTGAAGTGAAATTTAGTGTGTCATCCAGCAACGACACCTTTTGTTTGCGTTTAGTTTATCCTAAGGAT
GCGACGGGTGAGGGCACCATTTCCATCCTTGCGCCCGTGGGCAGTGCCTTATTGGGCTTATCCCAAGGGGATGAAATCGA
ATGGCCTGGCCCTGGTGGCACTATGGTGAAGGTTCGTATCGAAGAAATTATGTATCAGCCAGAGCGTAGCGGTGACTTTC
ACCGTTAA

Upstream 100 bases:

>100_bases
CTGCGAGCGTATTTTTTTATTGGTTTATCCCATTGGGGGAGGATAAGCCCAGAGCGGATGTTTACCCCTAAGGGACATCT
ATTTACATGAGGGAAAGACT

Downstream 100 bases:

>100_bases
TTATCGCTGGATTTTAGTGTGTAGAGGGCAATATCAAGGAAGCCAATATGATTATAGAGACAGAGCGTTTAATACTCAGA
CCATTTACCGAGCAGGATAT

Product: GreA/GreB family elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MKTPNIIISEIDLERLERLLESLPANAFPGRTALEAELDRADIVPAAQMPGNVVTMNSEVKFSVSSSNDTFCLRLVYPKD
ATGEGTISILAPVGSALLGLSQGDEIEWPGPGGTMVKVRIEEIMYQPERSGDFHR

Sequences:

>Translated_135_residues
MKTPNIIISEIDLERLERLLESLPANAFPGRTALEAELDRADIVPAAQMPGNVVTMNSEVKFSVSSSNDTFCLRLVYPKD
ATGEGTISILAPVGSALLGLSQGDEIEWPGPGGTMVKVRIEEIMYQPERSGDFHR
>Mature_135_residues
MKTPNIIISEIDLERLERLLESLPANAFPGRTALEAELDRADIVPAAQMPGNVVTMNSEVKFSVSSSNDTFCLRLVYPKD
ATGEGTISILAPVGSALLGLSQGDEIEWPGPGGTMVKVRIEEIMYQPERSGDFHR

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=134, Percent_Identity=46.2686567164179, Blast_Score=115, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14687; Mature: 14687

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: PS00591 GLYCOSYL_HYDROL_F10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPNIIISEIDLERLERLLESLPANAFPGRTALEAELDRADIVPAAQMPGNVVTMNSEV
CCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCE
KFSVSSSNDTFCLRLVYPKDATGEGTISILAPVGSALLGLSQGDEIEWPGPGGTMVKVRI
EEEEECCCCEEEEEEECCCCCCCCCEEEEEECCCHHHHCCCCCCCEECCCCCCCEEEEEE
EEIMYQPERSGDFHR
HHHHCCCCCCCCCCC
>Mature Secondary Structure
MKTPNIIISEIDLERLERLLESLPANAFPGRTALEAELDRADIVPAAQMPGNVVTMNSEV
CCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCE
KFSVSSSNDTFCLRLVYPKDATGEGTISILAPVGSALLGLSQGDEIEWPGPGGTMVKVRI
EEEEECCCCEEEEEEECCCCCCCCCEEEEEECCCHHHHCCCCCCCEECCCCCCCEEEEEE
EEIMYQPERSGDFHR
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]