Click here to switch to the map view.

The map label for this gene is sdhD [H]

Identifier: 113969972

GI number: 113969972

Start: 1933308

End: 1933655

Strand: Direct

Name: sdhD [H]

Synonym: Shewmr4_1632

Alternate gene names: 113969972

Gene position: 1933308-1933655 (Clockwise)

Preceding gene: 113969971

Following gene: 113969973

Centisome position: 41.08

GC content: 47.99

Gene sequence:

>348_bases
ATGGTAACCAATGCAGCAAGTTTTGGACGCAGTGGTGTTCATGACTTTATTCTACTACGCGCTAGTGCAGTAATCCTCGC
CTGTTACACCATTTTCATGGTTGGCTTTATTGCATGTAGTTCCCCTCTCACCTATGACGTTTGGCACGGCCTGTTTAGCG
CTCTGCCAATGAAAGTGTTTACCCTGCTTGCGCTAGTTGCACTGCTTGTTCACGCCTGGATTGGTGTATGGCAAGTATTG
ACGGATTACGTCAAGTGCACTTCGTTACGCGGTGTTTTACAGTTCACCTTCGTCGTCACCGTCTTTTGTTATCTGGCGGC
CGGCATTGTTATTGTGTGGGGTGTCTAA

Upstream 100 bases:

>100_bases
TGGATACCGGTCGTTGGGAAGAGTTGGCTTCGGGCACCGCCTCAGCGAAAGCTGTATTTGTACTGACGGTAGCCTTTTCA
ATTTTAGCGGGGTTATGGGT

Downstream 100 bases:

>100_bases
GTGAGTATTCCAGTACGTGAGTTTGATGCTGTAGTGATTGGTGCCGGCGGTGCCGGTATGCGCGCAGCATTACAGATTTC
TAAAGAAGGTAAGAGCTGTG

Product: succinate dehydrogenase subunit D

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MVTNAASFGRSGVHDFILLRASAVILACYTIFMVGFIACSSPLTYDVWHGLFSALPMKVFTLLALVALLVHAWIGVWQVL
TDYVKCTSLRGVLQFTFVVTVFCYLAAGIVIVWGV

Sequences:

>Translated_115_residues
MVTNAASFGRSGVHDFILLRASAVILACYTIFMVGFIACSSPLTYDVWHGLFSALPMKVFTLLALVALLVHAWIGVWQVL
TDYVKCTSLRGVLQFTFVVTVFCYLAAGIVIVWGV
>Mature_115_residues
MVTNAASFGRSGVHDFILLRASAVILACYTIFMVGFIACSSPLTYDVWHGLFSALPMKVFTLLALVALLVHAWIGVWQVL
TDYVKCTSLRGVLQFTFVVTVFCYLAAGIVIVWGV

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786941, Length=115, Percent_Identity=59.1304347826087, Blast_Score=133, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 12594; Mature: 12594

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTNAASFGRSGVHDFILLRASAVILACYTIFMVGFIACSSPLTYDVWHGLFSALPMKVF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TLLALVALLVHAWIGVWQVLTDYVKCTSLRGVLQFTFVVTVFCYLAAGIVIVWGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVTNAASFGRSGVHDFILLRASAVILACYTIFMVGFIACSSPLTYDVWHGLFSALPMKVF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TLLALVALLVHAWIGVWQVLTDYVKCTSLRGVLQFTFVVTVFCYLAAGIVIVWGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]