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The map label for this gene is ygiD [H]

Identifier: 113969956

GI number: 113969956

Start: 1912426

End: 1913235

Strand: Direct

Name: ygiD [H]

Synonym: Shewmr4_1616

Alternate gene names: 113969956

Gene position: 1912426-1913235 (Clockwise)

Preceding gene: 113969955

Following gene: 113969958

Centisome position: 40.64

GC content: 51.6

Gene sequence:

>810_bases
ATGACGCACGCGAATACCAGTTTAATGCCAGTGTTATTTGTTCCCCATGGTGGCGGGCATTTACCGCTACTCAATGATGC
AAATCATCGGGAGTTAAGGGCATTTTTATCCAAGGTTTCAGATACTATCCCGACCCCCAAGGCCATTGTATTAGTGACCG
CCCACTGGGAAGAGGCGCAGGTGACACTGTCTAGCCATCCCCATCCTGGCATGCTGTTCGACTATTATGGCTTTCCTCCT
GAGGCCTATACGCTTTCTTATCCCGCGCCCGGTGAGCCGCAACTCGCCGAAACCATTGCCGATTTACTCAAGGCGAGTGG
AATCGAGGTGCGACTCGACAATCAGCGAGCCTTCGATCATGGTACCTTTGTGCCACTTAAGTTGATGTACCCTGAGGCGA
ATATTCCAGTTGTGCAAATGTCCTTAGTGCAGCATCTAGATCCGAGTGCCCATATTGCTATCGGCGAGGCCCTCGCGGTA
TTGCGCGCGCAAGGGGGGTTGATTGTGGGGTCTGGCATGTCGTTTCACAATATGCGCGCGTTTTTCTCCAGCGATCCTAA
GGTGTTGCCTCGCAGCCAAGGGTTTGATACTTGGTTAACCGATGTGGTGACATCAGGCGATAGCCACGCCAAGGCACAAT
TAATTGATTGGCAATCGGCGCCGGAGGCACGTTTTAGCCACCCAAGGGAAGAGCACTTAATTCCTTTGCATGTGTGTTTT
GGGGCGGCGCATTTGCAGACGCCAAAAGCCACACATCAATTTAGTGGCCTGTTATTTAACACAGCAATATCGGGTTACCT
CTGGTCCTAA

Upstream 100 bases:

>100_bases
CAGCTGGTGGATATGAAAGCGATTTTCTGACCGTTGCCACAACGCTGGCAAGTTACGATTTACAAGTCACAACTAACGGT
TTCATCAAGAGAAGTTAACT

Downstream 100 bases:

>100_bases
TCAGCCCCTAAAGCAAAAGGTTCGTCATGTTGCGTATTAAACGCATCGTGACGAACCTTTTTATATTTAAAGCCTTGTCT
ATTTTAACCTAGCCGCCTTG

Product: extradiol ring-cleavage dioxygenase III subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MTHANTSLMPVLFVPHGGGHLPLLNDANHRELRAFLSKVSDTIPTPKAIVLVTAHWEEAQVTLSSHPHPGMLFDYYGFPP
EAYTLSYPAPGEPQLAETIADLLKASGIEVRLDNQRAFDHGTFVPLKLMYPEANIPVVQMSLVQHLDPSAHIAIGEALAV
LRAQGGLIVGSGMSFHNMRAFFSSDPKVLPRSQGFDTWLTDVVTSGDSHAKAQLIDWQSAPEARFSHPREEHLIPLHVCF
GAAHLQTPKATHQFSGLLFNTAISGYLWS

Sequences:

>Translated_269_residues
MTHANTSLMPVLFVPHGGGHLPLLNDANHRELRAFLSKVSDTIPTPKAIVLVTAHWEEAQVTLSSHPHPGMLFDYYGFPP
EAYTLSYPAPGEPQLAETIADLLKASGIEVRLDNQRAFDHGTFVPLKLMYPEANIPVVQMSLVQHLDPSAHIAIGEALAV
LRAQGGLIVGSGMSFHNMRAFFSSDPKVLPRSQGFDTWLTDVVTSGDSHAKAQLIDWQSAPEARFSHPREEHLIPLHVCF
GAAHLQTPKATHQFSGLLFNTAISGYLWS
>Mature_268_residues
THANTSLMPVLFVPHGGGHLPLLNDANHRELRAFLSKVSDTIPTPKAIVLVTAHWEEAQVTLSSHPHPGMLFDYYGFPPE
AYTLSYPAPGEPQLAETIADLLKASGIEVRLDNQRAFDHGTFVPLKLMYPEANIPVVQMSLVQHLDPSAHIAIGEALAVL
RAQGGLIVGSGMSFHNMRAFFSSDPKVLPRSQGFDTWLTDVVTSGDSHAKAQLIDWQSAPEARFSHPREEHLIPLHVCFG
AAHLQTPKATHQFSGLLFNTAISGYLWS

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=246, Percent_Identity=32.9268292682927, Blast_Score=124, Evalue=9e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 29463; Mature: 29332

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHANTSLMPVLFVPHGGGHLPLLNDANHRELRAFLSKVSDTIPTPKAIVLVTAHWEEAQ
CCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEE
VTLSSHPHPGMLFDYYGFPPEAYTLSYPAPGEPQLAETIADLLKASGIEVRLDNQRAFDH
EEECCCCCCCEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCC
GTFVPLKLMYPEANIPVVQMSLVQHLDPSAHIAIGEALAVLRAQGGLIVGSGMSFHNMRA
CCEEEEEEECCCCCCCEEHHHHHHHCCCCCEEEHHHHHHHHHHCCCEEEECCCCHHHHHH
FFSSDPKVLPRSQGFDTWLTDVVTSGDSHAKAQLIDWQSAPEARFSHPREEHLIPLHVCF
HHCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHCCCHHHCEEEEEEEE
GAAHLQTPKATHQFSGLLFNTAISGYLWS
CHHHCCCCCHHHHHCCCCEEHHHCCEECC
>Mature Secondary Structure 
THANTSLMPVLFVPHGGGHLPLLNDANHRELRAFLSKVSDTIPTPKAIVLVTAHWEEAQ
CCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEE
VTLSSHPHPGMLFDYYGFPPEAYTLSYPAPGEPQLAETIADLLKASGIEVRLDNQRAFDH
EEECCCCCCCEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCC
GTFVPLKLMYPEANIPVVQMSLVQHLDPSAHIAIGEALAVLRAQGGLIVGSGMSFHNMRA
CCEEEEEEECCCCCCCEEHHHHHHHCCCCCEEEHHHHHHHHHHCCCEEEECCCCHHHHHH
FFSSDPKVLPRSQGFDTWLTDVVTSGDSHAKAQLIDWQSAPEARFSHPREEHLIPLHVCF
HHCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHCCCHHHCEEEEEEEE
GAAHLQTPKATHQFSGLLFNTAISGYLWS
CHHHCCCCCHHHHHCCCCEEHHHCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]