| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
Click here to switch to the map view.
The map label for this gene is icd [H]
Identifier: 113969947
GI number: 113969947
Start: 1901329
End: 1903554
Strand: Direct
Name: icd [H]
Synonym: Shewmr4_1606
Alternate gene names: 113969947
Gene position: 1901329-1903554 (Clockwise)
Preceding gene: 113969940
Following gene: 113969948
Centisome position: 40.4
GC content: 47.3
Gene sequence:
>2226_bases ATGAAAGATAACTCACCAACAATTATTTATACCGAAACCGATGAAGCGCCAGCACTGGCAACGCTTTCTCTGTTACCTAT CATCAAAACCTTTACCGATGCGGCGGGTGTTGCGGTTGAAACCCGTGATATTTCTTTATCGGGCCGTGTGATTGCAAATT TCCCTGAAAAACTGACTGACGCGCAAAAAATTGGCGATCACTTAGCTGAGCTGGGCGAATTAGCCAATCAACCTGAAGCA AACATCATCAAACTGCCAAACATCAGTGCCTCGATTCCGCAGTTAAAAGCCTGTATTTTAGAGCTGCAACAGAAAGGTTA CGACATTCCAAATTATCCTGACGAGCCAAAGACTGACGAAGAAAAGTCTATCAAAGCCCGTTACGACAAGATCAAAGGCA GTGCGGTAAACCCAGTACTGCGTGAAGGTAACTCTGATCGCCGCGCGCCGCTTTCAGTGAAAAACTTCGCCAAGAAAAAC CCGCACTCTATGGGTAAATGGAGTAAAGAGTCACAATCTCACGTTGCTCACATGAGCGAAGGTGACTTCTACGGTAGCGA GCAGTCTGTGACTCTGGCTAACGCCGACACAGTTAACATCGTATTGTCGCAAAAAGACGGTCAAGACGTGGTATTGAAAT CTGGCCTGAAACTGCTAGCTGGTGAGATCATCGACGCGTCAGTGATGAGCAAAAAAGCCTTAGTGAGCTTCTTTGAGCGT GAAATCTCCAATGCCAAGGCCGAAAACGTGTTGTTATCACTGCACCTTAAAGCCACCATGATGAAAGTGTCTGATCCCAT TATGTTCGGCCACGCAGTGAAAGTGTTCTTCAAACCTGTGTTTGATAAACATGCGTCATTATTTGCTGAGCTAGGCGTTG ATGTGAACAACGGCTTTGGCGATGTATACGCCAAAATCGCTGGTTTACCCGCCGATGTCCGTGCACAAATTGAAGCCGAT ATCGCTGCTGTTTATGCTGAGCGCCCAGCGCTGGCGATGGTGGATTCTGATAAAGGCATCACCAACTTACACGTACCAAG CGACATCATTATCGATGCTTCTATGCCTGCGGCGATTCGTTCATCAGGCCAAATGTGGGGCCCTGATGGCAAGTTGCACG ACACTAAAGCGCTGATCCCAGACCGTTGCTACGCGGGTGTGTATCAAGAAACTATCGCTTTCTGTAAAGAACACGGAGCC TTCGATCCAAGCACTATGGGCAGTGTGCCAAACGTTGGTCTGATGGCGCAAAAAGCCGAAGAATACGGTAGCCACGATAA AACCTTCGAAATCCCAGCCGATGGCGTAGTTAACGTGATTGATGCCAGTGGCAAAGTGTTAATGAGCCACAACGTTGAAG CGGGCGATATTTGGAGAATGTGCCAAGTTAAAGATGCGCCAATTCGCGACTGGGTGAAATTAGCTGTACGCCGTGCACGC TTAAGCAATACTCCTGCGGTATTCTGGTTAGATGCGAATCGTGCCCACGATGCGCAGCTGATTGCTAAAGTGAAGCAATA TCTGCCTGAGCATGATACAAGCGGTTTAGAAATCAGCATCATGTCACCAGAAGAAGCGACTCGTTTCTCATTAGTGCGTA TTAAAGAAGGTAAAGATACTATTTCTGTTACCGGTAACGTACTGCGTGACTACCTGACTGACTTATTCCCAATTCTCGAA CTGGGTACCAGTGCTAAGATGCTGTCTATCGTGCCATTAATGAATGGTGGCGGCCTGTTCGAAACGGGTGCGGGCGGTAG TGCGCCTAAACACGTACAACAGGTTGAAAAAGAAGGTCACTTACGTTGGGACTCTCTGGGTGAATTCCTGGCTTTAGCGG CTTCTTTAGAGCATTTAAGCCAAACAGTGGGTAACCCTAAGGCACAAGTACTGGCGGATACTTTAGATCAAGCCATCGGT CAGTTCTTAGATAGCAATAAGTCGCCATCAAGACGCGTTGGTGAACTAGATAACCGTGGTAGCCATTTCTATCTGGCGAT GTACTGGGCACAAGCATTAGCTGCACAAAGCAAAGACGAGCAGTTACAAGCTCACTTTATTCCACTGGCTCACGCACTAG CTGCCAATGAGCAAGTGATTGTTGCTGAGTTAAACAATGCGCAAGGTGCACCAGTGGATTTAGGCGGTTACTACCGTTTA GATGCTGCAAAAGCTGAAAAAGCCATGCGCCCAAGTGAAACACTGAACAAGTTATTAATTGCTTAA
Upstream 100 bases:
>100_bases ACGATTGCCTCGATAGAGAATTCCGCCGTGCCAATGTTTGTTCGTCATGATATAAAATTATTATAAAAATATTAAATTTT ACAATAATGTAGGATGTAAC
Downstream 100 bases:
>100_bases CGATTTATCGTTAACTTAGCATTGTCTCGTCCTGAAATAAGTTGACACTTATTTCCATCTAAAACGCTCGATGAACCTCA TCGGGCGTTTTGTATTTTAA
Product: isocitrate dehydrogenase, NADP-dependent
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 741; Mature: 741
Protein sequence:
>741_residues MKDNSPTIIYTETDEAPALATLSLLPIIKTFTDAAGVAVETRDISLSGRVIANFPEKLTDAQKIGDHLAELGELANQPEA NIIKLPNISASIPQLKACILELQQKGYDIPNYPDEPKTDEEKSIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNFAKKN PHSMGKWSKESQSHVAHMSEGDFYGSEQSVTLANADTVNIVLSQKDGQDVVLKSGLKLLAGEIIDASVMSKKALVSFFER EISNAKAENVLLSLHLKATMMKVSDPIMFGHAVKVFFKPVFDKHASLFAELGVDVNNGFGDVYAKIAGLPADVRAQIEAD IAAVYAERPALAMVDSDKGITNLHVPSDIIIDASMPAAIRSSGQMWGPDGKLHDTKALIPDRCYAGVYQETIAFCKEHGA FDPSTMGSVPNVGLMAQKAEEYGSHDKTFEIPADGVVNVIDASGKVLMSHNVEAGDIWRMCQVKDAPIRDWVKLAVRRAR LSNTPAVFWLDANRAHDAQLIAKVKQYLPEHDTSGLEISIMSPEEATRFSLVRIKEGKDTISVTGNVLRDYLTDLFPILE LGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQVEKEGHLRWDSLGEFLALAASLEHLSQTVGNPKAQVLADTLDQAIG QFLDSNKSPSRRVGELDNRGSHFYLAMYWAQALAAQSKDEQLQAHFIPLAHALAANEQVIVAELNNAQGAPVDLGGYYRL DAAKAEKAMRPSETLNKLLIA
Sequences:
>Translated_741_residues MKDNSPTIIYTETDEAPALATLSLLPIIKTFTDAAGVAVETRDISLSGRVIANFPEKLTDAQKIGDHLAELGELANQPEA NIIKLPNISASIPQLKACILELQQKGYDIPNYPDEPKTDEEKSIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNFAKKN PHSMGKWSKESQSHVAHMSEGDFYGSEQSVTLANADTVNIVLSQKDGQDVVLKSGLKLLAGEIIDASVMSKKALVSFFER EISNAKAENVLLSLHLKATMMKVSDPIMFGHAVKVFFKPVFDKHASLFAELGVDVNNGFGDVYAKIAGLPADVRAQIEAD IAAVYAERPALAMVDSDKGITNLHVPSDIIIDASMPAAIRSSGQMWGPDGKLHDTKALIPDRCYAGVYQETIAFCKEHGA FDPSTMGSVPNVGLMAQKAEEYGSHDKTFEIPADGVVNVIDASGKVLMSHNVEAGDIWRMCQVKDAPIRDWVKLAVRRAR LSNTPAVFWLDANRAHDAQLIAKVKQYLPEHDTSGLEISIMSPEEATRFSLVRIKEGKDTISVTGNVLRDYLTDLFPILE LGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQVEKEGHLRWDSLGEFLALAASLEHLSQTVGNPKAQVLADTLDQAIG QFLDSNKSPSRRVGELDNRGSHFYLAMYWAQALAAQSKDEQLQAHFIPLAHALAANEQVIVAELNNAQGAPVDLGGYYRL DAAKAEKAMRPSETLNKLLIA >Mature_741_residues MKDNSPTIIYTETDEAPALATLSLLPIIKTFTDAAGVAVETRDISLSGRVIANFPEKLTDAQKIGDHLAELGELANQPEA NIIKLPNISASIPQLKACILELQQKGYDIPNYPDEPKTDEEKSIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNFAKKN PHSMGKWSKESQSHVAHMSEGDFYGSEQSVTLANADTVNIVLSQKDGQDVVLKSGLKLLAGEIIDASVMSKKALVSFFER EISNAKAENVLLSLHLKATMMKVSDPIMFGHAVKVFFKPVFDKHASLFAELGVDVNNGFGDVYAKIAGLPADVRAQIEAD IAAVYAERPALAMVDSDKGITNLHVPSDIIIDASMPAAIRSSGQMWGPDGKLHDTKALIPDRCYAGVYQETIAFCKEHGA FDPSTMGSVPNVGLMAQKAEEYGSHDKTFEIPADGVVNVIDASGKVLMSHNVEAGDIWRMCQVKDAPIRDWVKLAVRRAR LSNTPAVFWLDANRAHDAQLIAKVKQYLPEHDTSGLEISIMSPEEATRFSLVRIKEGKDTISVTGNVLRDYLTDLFPILE LGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQVEKEGHLRWDSLGEFLALAASLEHLSQTVGNPKAQVLADTLDQAIG QFLDSNKSPSRRVGELDNRGSHFYLAMYWAQALAAQSKDEQLQAHFIPLAHALAANEQVIVAELNNAQGAPVDLGGYYRL DAAKAEKAMRPSETLNKLLIA
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 80444; Mature: 80444
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDNSPTIIYTETDEAPALATLSLLPIIKTFTDAAGVAVETRDISLSGRVIANFPEKLTD CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCEEECCCHHHHH AQKIGDHLAELGELANQPEANIIKLPNISASIPQLKACILELQQKGYDIPNYPDEPKTDE HHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH EKSIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNFAKKNPHSMGKWSKESQSHVAHMSE HHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCC GDFYGSEQSVTLANADTVNIVLSQKDGQDVVLKSGLKLLAGEIIDASVMSKKALVSFFER CCCCCCCCEEEEECCCEEEEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH EISNAKAENVLLSLHLKATMMKVSDPIMFGHAVKVFFKPVFDKHASLFAELGVDVNNGFG HHHCCCHHHEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DVYAKIAGLPADVRAQIEADIAAVYAERPALAMVDSDKGITNLHVPSDIIIDASMPAAIR HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEEECCCCHHHH SSGQMWGPDGKLHDTKALIPDRCYAGVYQETIAFCKEHGAFDPSTMGSVPNVGLMAQKAE CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHH EYGSHDKTFEIPADGVVNVIDASGKVLMSHNVEAGDIWRMCQVKDAPIRDWVKLAVRRAR HHCCCCCEEECCCCCEEEEECCCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH LSNTPAVFWLDANRAHDAQLIAKVKQYLPEHDTSGLEISIMSPEEATRFSLVRIKEGKDT CCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCE ISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQVEKEGH EEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHCC LRWDSLGEFLALAASLEHLSQTVGNPKAQVLADTLDQAIGQFLDSNKSPSRRVGELDNRG CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCC SHFYLAMYWAQALAAQSKDEQLQAHFIPLAHALAANEQVIVAELNNAQGAPVDLGGYYRL CEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCCEEEE DAAKAEKAMRPSETLNKLLIA CHHHHHHCCCCHHHHHHHHCC >Mature Secondary Structure MKDNSPTIIYTETDEAPALATLSLLPIIKTFTDAAGVAVETRDISLSGRVIANFPEKLTD CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCEEECCCHHHHH AQKIGDHLAELGELANQPEANIIKLPNISASIPQLKACILELQQKGYDIPNYPDEPKTDE HHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH EKSIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNFAKKNPHSMGKWSKESQSHVAHMSE HHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCC GDFYGSEQSVTLANADTVNIVLSQKDGQDVVLKSGLKLLAGEIIDASVMSKKALVSFFER CCCCCCCCEEEEECCCEEEEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH EISNAKAENVLLSLHLKATMMKVSDPIMFGHAVKVFFKPVFDKHASLFAELGVDVNNGFG HHHCCCHHHEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DVYAKIAGLPADVRAQIEADIAAVYAERPALAMVDSDKGITNLHVPSDIIIDASMPAAIR HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEEECCCCHHHH SSGQMWGPDGKLHDTKALIPDRCYAGVYQETIAFCKEHGAFDPSTMGSVPNVGLMAQKAE CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHH EYGSHDKTFEIPADGVVNVIDASGKVLMSHNVEAGDIWRMCQVKDAPIRDWVKLAVRRAR HHCCCCCEEECCCCCEEEEECCCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH LSNTPAVFWLDANRAHDAQLIAKVKQYLPEHDTSGLEISIMSPEEATRFSLVRIKEGKDT CCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCE ISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQVEKEGH EEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHCC LRWDSLGEFLALAASLEHLSQTVGNPKAQVLADTLDQAIGQFLDSNKSPSRRVGELDNRG CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCC SHFYLAMYWAQALAAQSKDEQLQAHFIPLAHALAANEQVIVAELNNAQGAPVDLGGYYRL CEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCCEEEE DAAKAEKAMRPSETLNKLLIA CHHHHHHCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]