| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is 113969916
Identifier: 113969916
GI number: 113969916
Start: 1859186
End: 1860268
Strand: Direct
Name: 113969916
Synonym: Shewmr4_1575
Alternate gene names: NA
Gene position: 1859186-1860268 (Clockwise)
Preceding gene: 113969914
Following gene: 113969917
Centisome position: 39.5
GC content: 49.4
Gene sequence:
>1083_bases ATGCTGAAATTCCTATTAAAGCCAAGCTTACTCGCGTTTTTATACTGCCTGTTTACCGTTAATAGCCTGCAAGCTGTTGA AGTGAGTAAATTAGATGAAGCCGATGTGCCCGTGGCTTCCCGCGCCGTGCCTGAGCGGAATAAAGCCCTTAAAGCCGCGC TGGAAAAAGTGATCATTAAAAATACCGGGACAGCACGTTCTTTGGATAACGGCGTTATTCAATCGCAACTGGCCAATCCC GATGCACTGCTGAGCCAATATGGTTATGTGGAGCAAAATGGCCAACTGCTGTTAAAAGCCAACTTTGAGCATCGCCGCAT TATTACCCTGTTACGTCAGGCCCAATTACCCGTGTGGGGCATTCAACGTCCACTGACACTCTTTTGGGTTGCCATGCCAA GTGAAGGTGACACGATTTTACTGAGTGATTCATCGACCTTAGCCGAGCGTCAGGCATTCAATACCTTCTCCGATGAGCGC GGCATTCCCGTCTTGCTGCCAATCCTCGACCTCGATGAGTTAATGGGCATTAATCCCAATGATGTTAAAGGCATGTTTGC CGATATAGTGTCTAGCGTCTCGGGACGTTATCAAGCCGACTTCTTAGCCCTAGTAGCTATTGAACCAGCTGGAAACCAAG TGCGTTACCGCTTGAATTTGTACACCAAGACCACGATCGACTCGTTAACGCCGCCACTGTTTAGTTTTAATGGCACGGCA GAAAATAGCGCGCAGGCGATCACCGCCATGATGGCCGCTCTTGGGGATTATTATTTTACTAAGTACGCCATTGCCGATTC CGGCGAACAGGTCGGCGCCAGCGTGACCTTCGTGAACATTGATAAAATGGCGCAGCTAGTTGAAGTGGAAAAATACTTAA AGCAACTCAGCGCAGTGAAGAATGCGACGCTGTCGCGCATCCAAGGCAATACCGCAACCTTTTCCTTGGATTTGTTTGGT TCACAGACCGACTTTGAGCGTTTACTGAGTCTAGAGCCGCGAATTTCGGTGGTGGCGCCAGGGGAGTTTTCTGCCGGTGC CAGCCCAGCGGGTAAAACTGTCTATCAATGGCGGTTACCTTAA
Upstream 100 bases:
>100_bases TGACAGCACTTAATCCGTGGTCGAAATCTCCCCAAGACTCGCTAAAGGCGCTAACTATGGTACAATTTGCACTATCTGAC GTTACTTCAACTACTCAAAG
Downstream 100 bases:
>100_bases ACTTCCCTCGTTGTGACTGGGCATGCCTATGCTCAGTCATGTGGGGGAGTCGATAATTTATTGATATTGAGACGTACGAG TGCCATTAAACTCACCGCTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 360; Mature: 360
Protein sequence:
>360_residues MLKFLLKPSLLAFLYCLFTVNSLQAVEVSKLDEADVPVASRAVPERNKALKAALEKVIIKNTGTARSLDNGVIQSQLANP DALLSQYGYVEQNGQLLLKANFEHRRIITLLRQAQLPVWGIQRPLTLFWVAMPSEGDTILLSDSSTLAERQAFNTFSDER GIPVLLPILDLDELMGINPNDVKGMFADIVSSVSGRYQADFLALVAIEPAGNQVRYRLNLYTKTTIDSLTPPLFSFNGTA ENSAQAITAMMAALGDYYFTKYAIADSGEQVGASVTFVNIDKMAQLVEVEKYLKQLSAVKNATLSRIQGNTATFSLDLFG SQTDFERLLSLEPRISVVAPGEFSAGASPAGKTVYQWRLP
Sequences:
>Translated_360_residues MLKFLLKPSLLAFLYCLFTVNSLQAVEVSKLDEADVPVASRAVPERNKALKAALEKVIIKNTGTARSLDNGVIQSQLANP DALLSQYGYVEQNGQLLLKANFEHRRIITLLRQAQLPVWGIQRPLTLFWVAMPSEGDTILLSDSSTLAERQAFNTFSDER GIPVLLPILDLDELMGINPNDVKGMFADIVSSVSGRYQADFLALVAIEPAGNQVRYRLNLYTKTTIDSLTPPLFSFNGTA ENSAQAITAMMAALGDYYFTKYAIADSGEQVGASVTFVNIDKMAQLVEVEKYLKQLSAVKNATLSRIQGNTATFSLDLFG SQTDFERLLSLEPRISVVAPGEFSAGASPAGKTVYQWRLP >Mature_360_residues MLKFLLKPSLLAFLYCLFTVNSLQAVEVSKLDEADVPVASRAVPERNKALKAALEKVIIKNTGTARSLDNGVIQSQLANP DALLSQYGYVEQNGQLLLKANFEHRRIITLLRQAQLPVWGIQRPLTLFWVAMPSEGDTILLSDSSTLAERQAFNTFSDER GIPVLLPILDLDELMGINPNDVKGMFADIVSSVSGRYQADFLALVAIEPAGNQVRYRLNLYTKTTIDSLTPPLFSFNGTA ENSAQAITAMMAALGDYYFTKYAIADSGEQVGASVTFVNIDKMAQLVEVEKYLKQLSAVKNATLSRIQGNTATFSLDLFG SQTDFERLLSLEPRISVVAPGEFSAGASPAGKTVYQWRLP
Specific function: Unknown
COG id: COG3249
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39453; Mature: 39453
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKFLLKPSLLAFLYCLFTVNSLQAVEVSKLDEADVPVASRAVPERNKALKAALEKVIIK CCCHHCCHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHC NTGTARSLDNGVIQSQLANPDALLSQYGYVEQNGQLLLKANFEHRRIITLLRQAQLPVWG CCCCCCHHHHHHHHHHCCCHHHHHHHCCCEECCCCEEEEECCCHHHHHHHHHHHCCCHHC IQRPLTLFWVAMPSEGDTILLSDSSTLAERQAFNTFSDERGIPVLLPILDLDELMGINPN CCCCEEEEEEEECCCCCEEEEECCHHHHHHHHHCCCCCCCCCEEEEECCCHHHHCCCCCC DVKGMFADIVSSVSGRYQADFLALVAIEPAGNQVRYRLNLYTKTTIDSLTPPLFSFNGTA HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEEEEECCHHHCCCCCEECCCCC ENSAQAITAMMAALGDYYFTKYAIADSGEQVGASVTFVNIDKMAQLVEVEKYLKQLSAVK CCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHH NATLSRIQGNTATFSLDLFGSQTDFERLLSLEPRISVVAPGEFSAGASPAGKTVYQWRLP HHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEECC >Mature Secondary Structure MLKFLLKPSLLAFLYCLFTVNSLQAVEVSKLDEADVPVASRAVPERNKALKAALEKVIIK CCCHHCCHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHC NTGTARSLDNGVIQSQLANPDALLSQYGYVEQNGQLLLKANFEHRRIITLLRQAQLPVWG CCCCCCHHHHHHHHHHCCCHHHHHHHCCCEECCCCEEEEECCCHHHHHHHHHHHCCCHHC IQRPLTLFWVAMPSEGDTILLSDSSTLAERQAFNTFSDERGIPVLLPILDLDELMGINPN CCCCEEEEEEEECCCCCEEEEECCHHHHHHHHHCCCCCCCCCEEEEECCCHHHHCCCCCC DVKGMFADIVSSVSGRYQADFLALVAIEPAGNQVRYRLNLYTKTTIDSLTPPLFSFNGTA HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEEEEECCHHHCCCCCEECCCCC ENSAQAITAMMAALGDYYFTKYAIADSGEQVGASVTFVNIDKMAQLVEVEKYLKQLSAVK CCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHH NATLSRIQGNTATFSLDLFGSQTDFERLLSLEPRISVVAPGEFSAGASPAGKTVYQWRLP HHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA