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The map label for this gene is 113969876

Identifier: 113969876

GI number: 113969876

Start: 1809200

End: 1812046

Strand: Direct

Name: 113969876

Synonym: Shewmr4_1534

Alternate gene names: NA

Gene position: 1809200-1812046 (Clockwise)

Preceding gene: 113969875

Following gene: 113969877

Centisome position: 38.44

GC content: 50.58

Gene sequence:

>2847_bases
ATGTTTAATAACAAAACACTGTTGGCGTTAGCCATCAGTAGCGTGTGTGGGTTTGCCCATGCTGCCGATAATCTGATTAT
TTCTGAATATGTTGAAGGCAGCAGCAATAACAAAGCCATTGAGCTGTACAACCCAACTGCCAACACTCTCGATTTAAGCC
AGTATCAATTGCGCTTCTATTTTAATGGCAGCACCAATGTGGGCACAACTATCGCCCTAAACGGTACCTTAGCCGCAGGT
GCGACTTATGTGGTTGCTGATAACGACGCATCGGCGGATATTCTGGCGGTGACGAATCAACAAAGCAGCGCGAGTTTTTT
CAATGGTGATGATGCCATTGTGCTGACCTATCAAGACCAAGTGATTGATAGCTTAGGTCAAGTGGGTGTCGATCCCGGCA
GTGAGTGGGGCAGTAGTGATTTATCGACGCAGGACAATACCCTGCGCCGCAATCCCGATCAGCTAATCGCCGATACCATT
ATTGATGATGCTGTCACCTTTAATACATGGTTAGGTTTTGCCAAAGACGATATCTCGGATCTGGGTAAGTTCAGCGTGGG
CACTCCCACCGATCCTGTTGAACCGCCACCGAGTTCATTAGCCTGTGGTGAAGCCTCAACGCCTATCCATGCCCTACAAG
GTTCGACCAATGTCAGTCCGTTAAACGGACAAACCTTAGTGGTAGAAGCCATAGTGGTGAGTAACCAAGAAGCTGGCCTA
AAGGGCATCTTCGTGCAAATGGCCGACAACGAAGCCGATAACGATCCTCAAACCTCGGAAGGGGTGTTTGTTTATACCGG
TAATGCGCCTACGGGTTACGTGGCGGGCGACCGTGTACGCTTAAAGGCTAAAGTCACTGAATATCAAGGCTTAACGGAAC
TGACTACCGTTGCCGATCATAAACTGTGCGCCGCCGGACAAACCCTACCCACAGCCGCCGTGGTGACATTACCTGTGAAT
TCGAGCGATGACTTTGAACCATTTGAAGGCATGCGCGTCCGCTTTAGCCAAGATCTGGTCGTGAACGAAGTATACAACTT
GGGCCGCTATGGTGAAATATCACTCGGTAGCAGCCGTCACTTTATCGGGACACAAGTCGCTGCGCCAGGTGCCGATGCCT
TGGCCGTCACTGCGGCCAATCTTAAAGACAGTATTTTACTCGACGATGGCCTAACGGCGCAGAACCCTGATCCTGTGATT
TTCCCTGCGCCAGGTTTAAGCGCGTCGAACACTGTGCGTGTGGGCGATAAAGCCACGAGCCTGACGGGCGTCATGCACTA
TGGCTTTAATCTTTATCGCATTATGCCGACTGAGCCAGTTAATTTTGTGGCGGAAAATCCTCGTCCACAATCGCCAGAGC
TTGCCGAAGGTGGCAACCTGAAAGTCGCTAGCTTTAACGTACTGAACTACTTTAATGGCGATGGGCAGGGCGGTGGTTTC
CCTACTTCGCGCGGTGCCAATACCCTGAGTGAGTTTGAGCGTCAAAAAGCGAAGATTGTCAGCGCTATGGTGGGGATCAG
TGCCGATGTGTTTGGTCTGATGGAAATCGAGAACGATGGCTTTGGCGCCAACTCGGCGATTGCCGATCTCGTGGCGGGCC
TCAATGCCGCCGTGGGTGAAAATCGTTATGCCTATGTTATTCCAAAGGTCAATGGCAGCAACTTAAGCGCGATCGGTACG
GATGCGATTACCGTTGGTTTAATTTATCGCAGTGACAAAGTGAGCCCTCAGGGTGATGCGCGTATTTTATCGAGCGCGAA
CTCTCCCTTAGATGACGCCGGGCAGCCGCAGTTCGACGACAGCAAAAATCGCCCTATGTTGACTCAAGCCTTCGCGCTAA
ACGGCAGTGAGGAGAGTGTGGTCGTTGCAGTTAATCACTTGAAATCTAAGGGCAGTGAGTGTGCTGGCGATCCAGATATG
AACGATGGCCAAGGTAACTGCAATATTACCCGTACCCGCGCAGCAACGGCGGCGGGGCAGTGGATTGCCGCGCAGTATCC
AGAGCAAGGCGTACTGCTGATTGGCGACTTAAACTCCTATGCCAAGGAAGATCCGCTAAGCGCATTGGCTAACGCTGGCT
TTAGCGAGTTGTTTGCAAAACTCGAAAAAGCCAATCCTTATTCCTATGTATTCTCGGGTGAATCGGGGCAGTTAGACCAT
GCGCTGGCCAATGCTGCGTTAGTGGATAAAGTCCTAGATGTGACCGAGTGGCATATCAATACCGACGAGCCGCGCGTGTT
AGATTACAACGAAGAGTTCAAGACGGCTGCGCAGGTGCAAGACCTGTACGCCAGTGATGCTTATCGTTCATCGGATCATG
ATCCTGTGGTGATTTCACTCCTGCTCGAAGCGGAAAACCTTGCTCCTGAAGCCAGCTTCACTCAGGTTGTGAATGGTGCG
AGTGTGCAATTTACCTCTACTTCAACAGATAGCGACGGCCAAATCGTCTCTACTGAGTGGGACTTTGGTGACAACACTCA
AACCATGGGAGAGGCCGTATCCCACACCTATGCGCAAACTGGTGATTATCTTGTGACGTTAACCGTGACCGATAATGACG
GTTTAAGCCATAGCAGCTCACAAATGGTGTCTGTCGTGGTTGAGAACGTGAAAAAGCCACCCGTTGCGCAAATTCAACAC
ATCAATTTATGGCTAGTCGATATGTTTATTTCGACCAGCTATGACACAGACGGTGTGATCAAGCAGCATAAGTGGAAGTT
TGATAACGGTAGCCGTGCAAGTGGTCCTGTGGTGTTTCGTCCAGCTCGCCGCGGACTCCATACGGTCGAGTTAACCGTGA
AAGACAATGATAAATTAACGGATACCACGTCACTGACGTTCCGTTAA

Upstream 100 bases:

>100_bases
TTCCCTATAGTATCGTCAGTTTTCGAGGCTAAGCGCTTCGAAAAATCGTAAGTCTTTAACTTCAATACCAATATAAAAAA
GATACTTATTAGGGGTCATT

Downstream 100 bases:

>100_bases
GCGTTAGCCCCTTTCTTTAAATATCAAAAGCCTGCTATTGCAGGCTTTTTTACGTTTATTCACTTACTTAATGACTATCT
TAACTGACTGTATCAACTGA

Product: PKD domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 948; Mature: 948

Protein sequence:

>948_residues
MFNNKTLLALAISSVCGFAHAADNLIISEYVEGSSNNKAIELYNPTANTLDLSQYQLRFYFNGSTNVGTTIALNGTLAAG
ATYVVADNDASADILAVTNQQSSASFFNGDDAIVLTYQDQVIDSLGQVGVDPGSEWGSSDLSTQDNTLRRNPDQLIADTI
IDDAVTFNTWLGFAKDDISDLGKFSVGTPTDPVEPPPSSLACGEASTPIHALQGSTNVSPLNGQTLVVEAIVVSNQEAGL
KGIFVQMADNEADNDPQTSEGVFVYTGNAPTGYVAGDRVRLKAKVTEYQGLTELTTVADHKLCAAGQTLPTAAVVTLPVN
SSDDFEPFEGMRVRFSQDLVVNEVYNLGRYGEISLGSSRHFIGTQVAAPGADALAVTAANLKDSILLDDGLTAQNPDPVI
FPAPGLSASNTVRVGDKATSLTGVMHYGFNLYRIMPTEPVNFVAENPRPQSPELAEGGNLKVASFNVLNYFNGDGQGGGF
PTSRGANTLSEFERQKAKIVSAMVGISADVFGLMEIENDGFGANSAIADLVAGLNAAVGENRYAYVIPKVNGSNLSAIGT
DAITVGLIYRSDKVSPQGDARILSSANSPLDDAGQPQFDDSKNRPMLTQAFALNGSEESVVVAVNHLKSKGSECAGDPDM
NDGQGNCNITRTRAATAAGQWIAAQYPEQGVLLIGDLNSYAKEDPLSALANAGFSELFAKLEKANPYSYVFSGESGQLDH
ALANAALVDKVLDVTEWHINTDEPRVLDYNEEFKTAAQVQDLYASDAYRSSDHDPVVISLLLEAENLAPEASFTQVVNGA
SVQFTSTSTDSDGQIVSTEWDFGDNTQTMGEAVSHTYAQTGDYLVTLTVTDNDGLSHSSSQMVSVVVENVKKPPVAQIQH
INLWLVDMFISTSYDTDGVIKQHKWKFDNGSRASGPVVFRPARRGLHTVELTVKDNDKLTDTTSLTFR

Sequences:

>Translated_948_residues
MFNNKTLLALAISSVCGFAHAADNLIISEYVEGSSNNKAIELYNPTANTLDLSQYQLRFYFNGSTNVGTTIALNGTLAAG
ATYVVADNDASADILAVTNQQSSASFFNGDDAIVLTYQDQVIDSLGQVGVDPGSEWGSSDLSTQDNTLRRNPDQLIADTI
IDDAVTFNTWLGFAKDDISDLGKFSVGTPTDPVEPPPSSLACGEASTPIHALQGSTNVSPLNGQTLVVEAIVVSNQEAGL
KGIFVQMADNEADNDPQTSEGVFVYTGNAPTGYVAGDRVRLKAKVTEYQGLTELTTVADHKLCAAGQTLPTAAVVTLPVN
SSDDFEPFEGMRVRFSQDLVVNEVYNLGRYGEISLGSSRHFIGTQVAAPGADALAVTAANLKDSILLDDGLTAQNPDPVI
FPAPGLSASNTVRVGDKATSLTGVMHYGFNLYRIMPTEPVNFVAENPRPQSPELAEGGNLKVASFNVLNYFNGDGQGGGF
PTSRGANTLSEFERQKAKIVSAMVGISADVFGLMEIENDGFGANSAIADLVAGLNAAVGENRYAYVIPKVNGSNLSAIGT
DAITVGLIYRSDKVSPQGDARILSSANSPLDDAGQPQFDDSKNRPMLTQAFALNGSEESVVVAVNHLKSKGSECAGDPDM
NDGQGNCNITRTRAATAAGQWIAAQYPEQGVLLIGDLNSYAKEDPLSALANAGFSELFAKLEKANPYSYVFSGESGQLDH
ALANAALVDKVLDVTEWHINTDEPRVLDYNEEFKTAAQVQDLYASDAYRSSDHDPVVISLLLEAENLAPEASFTQVVNGA
SVQFTSTSTDSDGQIVSTEWDFGDNTQTMGEAVSHTYAQTGDYLVTLTVTDNDGLSHSSSQMVSVVVENVKKPPVAQIQH
INLWLVDMFISTSYDTDGVIKQHKWKFDNGSRASGPVVFRPARRGLHTVELTVKDNDKLTDTTSLTFR
>Mature_948_residues
MFNNKTLLALAISSVCGFAHAADNLIISEYVEGSSNNKAIELYNPTANTLDLSQYQLRFYFNGSTNVGTTIALNGTLAAG
ATYVVADNDASADILAVTNQQSSASFFNGDDAIVLTYQDQVIDSLGQVGVDPGSEWGSSDLSTQDNTLRRNPDQLIADTI
IDDAVTFNTWLGFAKDDISDLGKFSVGTPTDPVEPPPSSLACGEASTPIHALQGSTNVSPLNGQTLVVEAIVVSNQEAGL
KGIFVQMADNEADNDPQTSEGVFVYTGNAPTGYVAGDRVRLKAKVTEYQGLTELTTVADHKLCAAGQTLPTAAVVTLPVN
SSDDFEPFEGMRVRFSQDLVVNEVYNLGRYGEISLGSSRHFIGTQVAAPGADALAVTAANLKDSILLDDGLTAQNPDPVI
FPAPGLSASNTVRVGDKATSLTGVMHYGFNLYRIMPTEPVNFVAENPRPQSPELAEGGNLKVASFNVLNYFNGDGQGGGF
PTSRGANTLSEFERQKAKIVSAMVGISADVFGLMEIENDGFGANSAIADLVAGLNAAVGENRYAYVIPKVNGSNLSAIGT
DAITVGLIYRSDKVSPQGDARILSSANSPLDDAGQPQFDDSKNRPMLTQAFALNGSEESVVVAVNHLKSKGSECAGDPDM
NDGQGNCNITRTRAATAAGQWIAAQYPEQGVLLIGDLNSYAKEDPLSALANAGFSELFAKLEKANPYSYVFSGESGQLDH
ALANAALVDKVLDVTEWHINTDEPRVLDYNEEFKTAAQVQDLYASDAYRSSDHDPVVISLLLEAENLAPEASFTQVVNGA
SVQFTSTSTDSDGQIVSTEWDFGDNTQTMGEAVSHTYAQTGDYLVTLTVTDNDGLSHSSSQMVSVVVENVKKPPVAQIQH
INLWLVDMFISTSYDTDGVIKQHKWKFDNGSRASGPVVFRPARRGLHTVELTVKDNDKLTDTTSLTFR

Specific function: Unknown

COG id: COG2374

COG function: function code R; Predicted extracellular nuclease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 5 PKD domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022409
- InterPro:   IPR000601 [H]

Pfam domain/function: PF00801 PKD [H]

EC number: NA

Molecular weight: Translated: 100901; Mature: 100901

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: PS50093 PKD ; PS00136 SUBTILASE_ASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNNKTLLALAISSVCGFAHAADNLIISEYVEGSSNNKAIELYNPTANTLDLSQYQLRFY
CCCCCEEHHHHHHHHHHHHHHHCCCEEEHHHCCCCCCCEEEEECCCCCEEECCEEEEEEE
FNGSTNVGTTIALNGTLAAGATYVVADNDASADILAVTNQQSSASFFNGDDAIVLTYQDQ
ECCCCCCCEEEEECCEEECCEEEEEECCCCCCEEEEEECCCCCCCEECCCCEEEEEECHH
VIDSLGQVGVDPGSEWGSSDLSTQDNTLRRNPDQLIADTIIDDAVTFNTWLGFAKDDISD
HHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCEEEHHHCCCCHHHHHH
LGKFSVGTPTDPVEPPPSSLACGEASTPIHALQGSTNVSPLNGQTLVVEAIVVSNQEAGL
HCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCCC
KGIFVQMADNEADNDPQTSEGVFVYTGNAPTGYVAGDRVRLKAKVTEYQGLTELTTVADH
EEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEHHHCCCHHHHHHHCC
KLCAAGQTLPTAAVVTLPVNSSDDFEPFEGMRVRFSQDLVVNEVYNLGRYGEISLGSSRH
HHHHCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCEEEECCCCC
FIGTQVAAPGADALAVTAANLKDSILLDDGLTAQNPDPVIFPAPGLSASNTVRVGDKATS
EEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCCEEEECCCHHH
LTGVMHYGFNLYRIMPTEPVNFVAENPRPQSPELAEGGNLKVASFNVLNYFNGDGQGGGF
HHHHEECCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCC
PTSRGANTLSEFERQKAKIVSAMVGISADVFGLMEIENDGFGANSAIADLVAGLNAAVGE
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCHHHHCC
NRYAYVIPKVNGSNLSAIGTDAITVGLIYRSDKVSPQGDARILSSANSPLDDAGQPQFDD
CEEEEEEECCCCCCCEEECCCEEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
SKNRPMLTQAFALNGSEESVVVAVNHLKSKGSECAGDPDMNDGQGNCNITRTRAATAAGQ
CCCCCEEEEEEEECCCCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCC
WIAAQYPEQGVLLIGDLNSYAKEDPLSALANAGFSELFAKLEKANPYSYVFSGESGQLDH
EEEECCCCCCEEEEECCCHHHHCCHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCHHH
ALANAALVDKVLDVTEWHINTDEPRVLDYNEEFKTAAQVQDLYASDAYRSSDHDPVVISL
HHHHHHHHHHHHHHHEEEECCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
LLEAENLAPEASFTQVVNGASVQFTSTSTDSDGQIVSTEWDFGDNTQTMGEAVSHTYAQT
EEEHHHCCCCCHHHHHHCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC
GDYLVTLTVTDNDGLSHSSSQMVSVVVENVKKPPVAQIQHINLWLVDMFISTSYDTDGVI
CCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHEEEEEEEEEEEEEECCCCCCCCC
KQHKWKFDNGSRASGPVVFRPARRGLHTVELTVKDNDKLTDTTSLTFR
CCCEEECCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCEEEEEC
>Mature Secondary Structure
MFNNKTLLALAISSVCGFAHAADNLIISEYVEGSSNNKAIELYNPTANTLDLSQYQLRFY
CCCCCEEHHHHHHHHHHHHHHHCCCEEEHHHCCCCCCCEEEEECCCCCEEECCEEEEEEE
FNGSTNVGTTIALNGTLAAGATYVVADNDASADILAVTNQQSSASFFNGDDAIVLTYQDQ
ECCCCCCCEEEEECCEEECCEEEEEECCCCCCEEEEEECCCCCCCEECCCCEEEEEECHH
VIDSLGQVGVDPGSEWGSSDLSTQDNTLRRNPDQLIADTIIDDAVTFNTWLGFAKDDISD
HHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCEEEHHHCCCCHHHHHH
LGKFSVGTPTDPVEPPPSSLACGEASTPIHALQGSTNVSPLNGQTLVVEAIVVSNQEAGL
HCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCCC
KGIFVQMADNEADNDPQTSEGVFVYTGNAPTGYVAGDRVRLKAKVTEYQGLTELTTVADH
EEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEHHHCCCHHHHHHHCC
KLCAAGQTLPTAAVVTLPVNSSDDFEPFEGMRVRFSQDLVVNEVYNLGRYGEISLGSSRH
HHHHCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCEEEECCCCC
FIGTQVAAPGADALAVTAANLKDSILLDDGLTAQNPDPVIFPAPGLSASNTVRVGDKATS
EEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCCEEEECCCHHH
LTGVMHYGFNLYRIMPTEPVNFVAENPRPQSPELAEGGNLKVASFNVLNYFNGDGQGGGF
HHHHEECCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCC
PTSRGANTLSEFERQKAKIVSAMVGISADVFGLMEIENDGFGANSAIADLVAGLNAAVGE
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCHHHHCC
NRYAYVIPKVNGSNLSAIGTDAITVGLIYRSDKVSPQGDARILSSANSPLDDAGQPQFDD
CEEEEEEECCCCCCCEEECCCEEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
SKNRPMLTQAFALNGSEESVVVAVNHLKSKGSECAGDPDMNDGQGNCNITRTRAATAAGQ
CCCCCEEEEEEEECCCCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCC
WIAAQYPEQGVLLIGDLNSYAKEDPLSALANAGFSELFAKLEKANPYSYVFSGESGQLDH
EEEECCCCCCEEEEECCCHHHHCCHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCHHH
ALANAALVDKVLDVTEWHINTDEPRVLDYNEEFKTAAQVQDLYASDAYRSSDHDPVVISL
HHHHHHHHHHHHHHHEEEECCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
LLEAENLAPEASFTQVVNGASVQFTSTSTDSDGQIVSTEWDFGDNTQTMGEAVSHTYAQT
EEEHHHCCCCCHHHHHHCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC
GDYLVTLTVTDNDGLSHSSSQMVSVVVENVKKPPVAQIQHINLWLVDMFISTSYDTDGVI
CCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHEEEEEEEEEEEEEECCCCCCCCC
KQHKWKFDNGSRASGPVVFRPARRGLHTVELTVKDNDKLTDTTSLTFR
CCCEEECCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]