| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is 113969857
Identifier: 113969857
GI number: 113969857
Start: 1782240
End: 1784102
Strand: Direct
Name: 113969857
Synonym: Shewmr4_1515
Alternate gene names: NA
Gene position: 1782240-1784102 (Clockwise)
Preceding gene: 113969856
Following gene: 113969858
Centisome position: 37.87
GC content: 48.42
Gene sequence:
>1863_bases ATGAACGCCAGCGAATTACAACCCGTTGTGCAGTTTTTAACGTCTACGGCTCCCTTCGATACCTTGCCAGACGACACTAT TCGCCATTGTGCTAAGTCAGTGATCGTCGGTTATTACAGCAAAGCCTCAGGATTTGTGAAATTTGATGCCGATGCGCCGA AATTGTATTTGGTTCGCAGCGGTGCCTTTGAGGTACGCGATCCCGAAGGGGTCTTAGTAGACAGGGTCGCCGAAGGGGAG TTTTTTGGCTTTTCGACCTTATTGTCAGGGGAGAAGGTCGTGAATCGGGTCGCCATTCTCGAAGACAGTTTGGTATACCA CTTACCGCAGGCATTGTTCGATCAACTACGCAGTGAAAGTCGGCATTTTGATAAATTTTTCACCCGCGCCTTTGCCAAGC GGTTGCGCCATGAGGCGCGTTTTAAGGCCAAAGATCTGACGACCACCAGTCGTATCAGTACCTTGATGTCATCTTCACCC ATTATGATCGATGCCCATGCTAGCGTAACGCAAGCGGCGCTCTTGATGCGTAACTCGCGGGTGTCGTCTTTACTCGTCAC AGATAATCATAAGCTAGTGGGGATTTTAACCGACAAGGATCTGCGTAATCGGGTGCTTGCTGCCGGACTCGATGGCCGAA TCGCTGTGCATCAAGCCATGACCACATCGCCGATTTCGATTTCATCGAATGCCTTGATTTTCGAGGCGATGTTATTAATG AGTGAGCATAACATTCATCACTTGCCGATCATTGATGATCAAAATACCGATGAAGTGAAAGCCATTGGTATGGTGACCAG CACCGACATCTTACGCGGCCAAGGTTCGCAGCCCTTGCTGCTGATTGGTGAAATCGAGCGACAGCGGGATCTCGCCAGCT TAATTAGCGTCAGTAAACAAATTCCCTTGTTGTTACAAAATTTAATCAGTGCCGATGCAAGGGCTGAGGAGATTGGTCGC GTGCTGACCTCGGTCACCGATGCCTTAACCCGGCGATTGATTGTATTAAATCAGCAAATTCTCGGTGAGGCGCCGATGGC GTTTTGCTGGTTAGCCTTTGGCTCGCAGGGGCGGCAAGACCAAGCCGCTTGTTCGGATCAAGATAACGGACTGCTGGTGG CCGAAGAAATGGATGATTATGCCAAAGGGTATTTCGATGCCTTGACCCATGCGGTCTGTGCTGGGCTTGACCAATGTGGC TATGCCTTTTGCCCCGGCAATATCATGGCGCAAAATCCTAAGTGGCGTATGTCACTCAAAGCATGGCAACAGGTCTTTGA AAAGTGGGTGGTTACGCCAGAGCCAAAGGCATTGATGCATGCGAGTATTTTCTTCGATATGCGTTCGGTGTTTGGCCCGC AATCCTTATTCAATGCTCTGCAGGATAAAGTGCTGGCACAAACCAAAGACAATGATATTTTCCTCGCGGGTTTAACTGGC AATTCCTTAATCGAGTCTCCGCCCTTAGGATTTTTTAGAAAATTTGTGTTAGAACGCGATGGCAGTGAAGTCAAAGGCAT TGATTTAAAGCATAAAGGTAATGCCTTGATCAACGATATCGCCCGCGTATATGCCCTGTCGGCCGGCATAAAGGAAGTCA ATACTGCCAAACGCATTCGGGCACTGATGGACGCGAATATTCTCAATCGTAAGGATGCGCTTAACTTAGCCGATGCTCAC GAGTTTATCGCCCATATGCGGTTATCAAATCAAGGTTACCAACATACGCAGGGGCTTAAGATTAGTAACTATCTGTTACC TGGACATTTATCTTCTTTGGTACGGCATCAACTACGGGATGCCTTTAAGGTGGTCCATGATGCCCAGTCGGGCATGAAGA TGAAATTTATGCGGAGCTTTTAA
Upstream 100 bases:
>100_bases GTGGTGTCAGCGCTGAGTTCGAGCCTGACTTTAGTCGTATATGGCCCAACAATCGAGCGCGTTATAGTGGGATAAAATTC ACCTAAAATAAGGTGTTGCT
Downstream 100 bases:
>100_bases TGGGACCATGGTGGGTTAACGCTAAGCTGAGGTGGCGAGCACTGCGCTGTCAGCATGAGTTATTTAAGGATTACTATCAA TCCTTATTGCCACTCTTAGA
Product: cyclic nucleotide-binding protein
Products: NA
Alternate protein names: Signal-Transduction Protein; Nucleotidyltransferase; Signal Transduction Protein With CBS Domains; Signal Transduction Protein; Signal-Transduction Protein With CBS Domains; Nucleotidyltransferase Family; CBS Domain Protein; Signal Protein; Inosine-5-Monophosphate Dehydrogenase; Nucleotidyltransferase Domain Family Protein; DNA Polymerase III Subunit Epsilon; CBS Signal-Transduction Protein; Cyclic-Nucleotide Signal Transduction Protein; Multidomain-Containing Protein; Cyclic Nucleotide-Regulated Nucleotidyltransferase; Nucleotidyltransferases; Methyl-Accepting Chemotaxis Protein A
Number of amino acids: Translated: 620; Mature: 620
Protein sequence:
>620_residues MNASELQPVVQFLTSTAPFDTLPDDTIRHCAKSVIVGYYSKASGFVKFDADAPKLYLVRSGAFEVRDPEGVLVDRVAEGE FFGFSTLLSGEKVVNRVAILEDSLVYHLPQALFDQLRSESRHFDKFFTRAFAKRLRHEARFKAKDLTTTSRISTLMSSSP IMIDAHASVTQAALLMRNSRVSSLLVTDNHKLVGILTDKDLRNRVLAAGLDGRIAVHQAMTTSPISISSNALIFEAMLLM SEHNIHHLPIIDDQNTDEVKAIGMVTSTDILRGQGSQPLLLIGEIERQRDLASLISVSKQIPLLLQNLISADARAEEIGR VLTSVTDALTRRLIVLNQQILGEAPMAFCWLAFGSQGRQDQAACSDQDNGLLVAEEMDDYAKGYFDALTHAVCAGLDQCG YAFCPGNIMAQNPKWRMSLKAWQQVFEKWVVTPEPKALMHASIFFDMRSVFGPQSLFNALQDKVLAQTKDNDIFLAGLTG NSLIESPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMDANILNRKDALNLADAH EFIAHMRLSNQGYQHTQGLKISNYLLPGHLSSLVRHQLRDAFKVVHDAQSGMKMKFMRSF
Sequences:
>Translated_620_residues MNASELQPVVQFLTSTAPFDTLPDDTIRHCAKSVIVGYYSKASGFVKFDADAPKLYLVRSGAFEVRDPEGVLVDRVAEGE FFGFSTLLSGEKVVNRVAILEDSLVYHLPQALFDQLRSESRHFDKFFTRAFAKRLRHEARFKAKDLTTTSRISTLMSSSP IMIDAHASVTQAALLMRNSRVSSLLVTDNHKLVGILTDKDLRNRVLAAGLDGRIAVHQAMTTSPISISSNALIFEAMLLM SEHNIHHLPIIDDQNTDEVKAIGMVTSTDILRGQGSQPLLLIGEIERQRDLASLISVSKQIPLLLQNLISADARAEEIGR VLTSVTDALTRRLIVLNQQILGEAPMAFCWLAFGSQGRQDQAACSDQDNGLLVAEEMDDYAKGYFDALTHAVCAGLDQCG YAFCPGNIMAQNPKWRMSLKAWQQVFEKWVVTPEPKALMHASIFFDMRSVFGPQSLFNALQDKVLAQTKDNDIFLAGLTG NSLIESPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMDANILNRKDALNLADAH EFIAHMRLSNQGYQHTQGLKISNYLLPGHLSSLVRHQLRDAFKVVHDAQSGMKMKFMRSF >Mature_620_residues MNASELQPVVQFLTSTAPFDTLPDDTIRHCAKSVIVGYYSKASGFVKFDADAPKLYLVRSGAFEVRDPEGVLVDRVAEGE FFGFSTLLSGEKVVNRVAILEDSLVYHLPQALFDQLRSESRHFDKFFTRAFAKRLRHEARFKAKDLTTTSRISTLMSSSP IMIDAHASVTQAALLMRNSRVSSLLVTDNHKLVGILTDKDLRNRVLAAGLDGRIAVHQAMTTSPISISSNALIFEAMLLM SEHNIHHLPIIDDQNTDEVKAIGMVTSTDILRGQGSQPLLLIGEIERQRDLASLISVSKQIPLLLQNLISADARAEEIGR VLTSVTDALTRRLIVLNQQILGEAPMAFCWLAFGSQGRQDQAACSDQDNGLLVAEEMDDYAKGYFDALTHAVCAGLDQCG YAFCPGNIMAQNPKWRMSLKAWQQVFEKWVVTPEPKALMHASIFFDMRSVFGPQSLFNALQDKVLAQTKDNDIFLAGLTG NSLIESPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMDANILNRKDALNLADAH EFIAHMRLSNQGYQHTQGLKISNYLLPGHLSSLVRHQLRDAFKVVHDAQSGMKMKFMRSF
Specific function: Unknown
COG id: COG2905
COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68832; Mature: 68832
Theoretical pI: Translated: 7.73; Mature: 7.73
Prosite motif: PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNASELQPVVQFLTSTAPFDTLPDDTIRHCAKSVIVGYYSKASGFVKFDADAPKLYLVRS CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEC GAFEVRDPEGVLVDRVAEGEFFGFSTLLSGEKVVNRVAILEDSLVYHLPQALFDQLRSES CCEEEECCCCCEEEEECCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RHFDKFFTRAFAKRLRHEARFKAKDLTTTSRISTLMSSSPIMIDAHASVTQAALLMRNSR HHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCC VSSLLVTDNHKLVGILTDKDLRNRVLAAGLDGRIAVHQAMTTSPISISSNALIFEAMLLM CCEEEEECCCEEEEEECCCHHHHHHHHCCCCCCEEEHHHHCCCCCCCCCCHHHHHHHHHH SEHNIHHLPIIDDQNTDEVKAIGMVTSTDILRGQGSQPLLLIGEIERQRDLASLISVSKQ HCCCCEECCEECCCCCCCEEEEEEEEHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHH IPLLLQNLISADARAEEIGRVLTSVTDALTRRLIVLNQQILGEAPMAFCWLAFGSQGRQD HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC QAACSDQDNGLLVAEEMDDYAKGYFDALTHAVCAGLDQCGYAFCPGNIMAQNPKWRMSLK HHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCHHHCCCEECCCCEEECCCCHHHHHH AWQQVFEKWVVTPEPKALMHASIFFDMRSVFGPQSLFNALQDKVLAQTKDNDIFLAGLTG HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCC NSLIESPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIR CCCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH ALMDANILNRKDALNLADAHEFIAHMRLSNQGYQHTQGLKISNYLLPGHLSSLVRHQLRD HHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEECEECCHHHHHHHHHHHHH AFKVVHDAQSGMKMKFMRSF HHHHHHHHHCCCCHHHHHCC >Mature Secondary Structure MNASELQPVVQFLTSTAPFDTLPDDTIRHCAKSVIVGYYSKASGFVKFDADAPKLYLVRS CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEC GAFEVRDPEGVLVDRVAEGEFFGFSTLLSGEKVVNRVAILEDSLVYHLPQALFDQLRSES CCEEEECCCCCEEEEECCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RHFDKFFTRAFAKRLRHEARFKAKDLTTTSRISTLMSSSPIMIDAHASVTQAALLMRNSR HHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCC VSSLLVTDNHKLVGILTDKDLRNRVLAAGLDGRIAVHQAMTTSPISISSNALIFEAMLLM CCEEEEECCCEEEEEECCCHHHHHHHHCCCCCCEEEHHHHCCCCCCCCCCHHHHHHHHHH SEHNIHHLPIIDDQNTDEVKAIGMVTSTDILRGQGSQPLLLIGEIERQRDLASLISVSKQ HCCCCEECCEECCCCCCCEEEEEEEEHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHH IPLLLQNLISADARAEEIGRVLTSVTDALTRRLIVLNQQILGEAPMAFCWLAFGSQGRQD HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC QAACSDQDNGLLVAEEMDDYAKGYFDALTHAVCAGLDQCGYAFCPGNIMAQNPKWRMSLK HHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCHHHCCCEECCCCEEECCCCHHHHHH AWQQVFEKWVVTPEPKALMHASIFFDMRSVFGPQSLFNALQDKVLAQTKDNDIFLAGLTG HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCC NSLIESPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIR CCCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH ALMDANILNRKDALNLADAHEFIAHMRLSNQGYQHTQGLKISNYLLPGHLSSLVRHQLRD HHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEECEECCHHHHHHHHHHHHH AFKVVHDAQSGMKMKFMRSF HHHHHHHHHCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA