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The map label for this gene is scpB [H]

Identifier: 113969808

GI number: 113969808

Start: 1714955

End: 1715551

Strand: Direct

Name: scpB [H]

Synonym: Shewmr4_1466

Alternate gene names: 113969808

Gene position: 1714955-1715551 (Clockwise)

Preceding gene: 113969807

Following gene: 113969809

Centisome position: 36.44

GC content: 46.73

Gene sequence:

>597_bases
ATGCAGATAAATCCAATTCAATTAAAACAGCTTATTGAAGCGAGTCTGTTTGTATTGGGGAAACCCTTGTCGGTGAAAAT
GTTGAAAGAAACCGTGTTGGCGGATTTCAGCGTTTCCAGAGACAAAATCAAAGCCGCATTGGAAGAGTTGCAGCAGGATT
ATCAGGAACGGGGTGTTCAACTTGTGAAAGTGGCTGGGGGTTATCGCTTCCAGACCTTGGAAGTCCTGAGTCCTTTTTTG
CAGCCCCTGTGGCAGGAAAAAGCACCTAAGTATTCGCGGGCAACATTAGAGACCTTGGCGGTGATCGCCTATCGTCAACC
CGTGACCCGTGGCGATATTGAGCAGGTGCGTGGTGTGGCCATTAGTAGCCATATCATTAAAAGTTTGTCAGATAGACATT
GGATTAAAGTCGTTGGCCACAAAGAAGTCCCGGGGAGACCCGCACTCTACGCCACGACCTTAGAATTTTTAGCCTATTTT
GGCTTAGATACCCTAGCGGATTTACCTGCGCTTACGGATACTGAGTCATTGCAGGCGGTATTTTCAGGTTTGAAAGTAAC
GCCTGAACAGTCAGAAGAGCAAGATACTAATGAGTGA

Upstream 100 bases:

>100_bases
GGTGACCTTTTTAGCGCTGATGGAATTGGTCAAAGAATTATTAGTGGAATTGTACCAAACAGAGCCGTTTTCAACTATTT
ACGTAAAGGCCTATTAATTG

Downstream 100 bases:

>100_bases
AAAATTGCAGAAAGTCTTGGCCCGTGCAGGCCATGGCTCCCGTCGTGAGATGGAGGCATGGATTGCTGCAGGTCGAGTTA
GTATTGATGGCGTAATTGCC

Product: condensin subunit ScpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MQINPIQLKQLIEASLFVLGKPLSVKMLKETVLADFSVSRDKIKAALEELQQDYQERGVQLVKVAGGYRFQTLEVLSPFL
QPLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSLSDRHWIKVVGHKEVPGRPALYATTLEFLAYF
GLDTLADLPALTDTESLQAVFSGLKVTPEQSEEQDTNE

Sequences:

>Translated_198_residues
MQINPIQLKQLIEASLFVLGKPLSVKMLKETVLADFSVSRDKIKAALEELQQDYQERGVQLVKVAGGYRFQTLEVLSPFL
QPLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSLSDRHWIKVVGHKEVPGRPALYATTLEFLAYF
GLDTLADLPALTDTESLQAVFSGLKVTPEQSEEQDTNE
>Mature_198_residues
MQINPIQLKQLIEASLFVLGKPLSVKMLKETVLADFSVSRDKIKAALEELQQDYQERGVQLVKVAGGYRFQTLEVLSPFL
QPLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSLSDRHWIKVVGHKEVPGRPALYATTLEFLAYF
GLDTLADLPALTDTESLQAVFSGLKVTPEQSEEQDTNE

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 22181; Mature: 22181

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQINPIQLKQLIEASLFVLGKPLSVKMLKETVLADFSVSRDKIKAALEELQQDYQERGVQ
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCE
LVKVAGGYRFQTLEVLSPFLQPLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVA
EEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
ISSHIIKSLSDRHWIKVVGHKEVPGRPALYATTLEFLAYFGLDTLADLPALTDTESLQAV
HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCHHHHHHH
FSGLKVTPEQSEEQDTNE
HHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQINPIQLKQLIEASLFVLGKPLSVKMLKETVLADFSVSRDKIKAALEELQQDYQERGVQ
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCE
LVKVAGGYRFQTLEVLSPFLQPLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVA
EEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
ISSHIIKSLSDRHWIKVVGHKEVPGRPALYATTLEFLAYFGLDTLADLPALTDTESLQAV
HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCHHHHHHH
FSGLKVTPEQSEEQDTNE
HHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]