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The map label for this gene is ymdC [H]

Identifier: 113969713

GI number: 113969713

Start: 1598874

End: 1600496

Strand: Direct

Name: ymdC [H]

Synonym: Shewmr4_1371

Alternate gene names: 113969713

Gene position: 1598874-1600496 (Clockwise)

Preceding gene: 113969712

Following gene: 113969714

Centisome position: 33.97

GC content: 48.55

Gene sequence:

>1623_bases
GTGACGATATTCGGGATATCTTCGCATCATTATTGCGACGTTTTCGCCAAGATAAAAACTAAGGACGTATGGCTAAAATG
GTGGGGTTATCCTGTCAAAACAATGGTATTTCGTCTCTCACTTCCCTTTTGGGGGCTTTTGCTCCTGTTGATTAACGGTT
GTAGCTCAATGGCAGAATTACCCGCAAAATCAATTGAAACAGCCTATCCCTTAGCCGAAAACTCCACCTTGTATCAGGTG
GTAAAAAGCGCCATGGCACAGCATCCCGATCAAACGGGTGTGTTTCCCCTCGGTGATGGGGTCGATGCCTTCGTCGCTCG
CTTGCTGCTGATAGAGTCCGCCGTCAGTAGTATCGATCTGCAATATTATATTTATCGCAATGATGAAACTGGCCGCTTGC
TGACCTGGTTTTTATTGGATGCAGCGGAGCGCGGGGTGCGAGTGCGTTTATTGCTGGATGATATGACGAGTGCCGATATG
GACGAGCGTTTAATCGCGCTGGCTCGTCACCCCAATATCAGTATTAGACTGTTTAATCCGAGTACCGAGCGTAATTACCG
CGGCCTTGCCATGTTGTTTGGTTTTAGTCGCTTAAACCATAGGATGCACAATAAGTCGTTCACAGTGGACAATGTGATGA
CCATTGTCGGTGGACGTAATATTGGTGATGAATATTTTGCGGCGGACAAAAATCTTGAATTTGGCGATTTTGACTTGTTA
GCCATGGGGGATGTCGTGCCTCAGGTGTCCAATGAGTTTGACCGATACTGGAATGCCGACTCGACCCATCCGATAGAAGT
CTTGAGTGACCAAAATCCCACACAGGCGGAACTGGAAGCGCTTGCTAAGCGGGTTAGCGAACAGCGTGAGCAGTCCAAGT
CGAGTGAATATGTTAAACGCTTAGCCGAGAGCCAACTATTGGCGAATTTGCAGAGCGACAACATGGCTTGGTTTTGGGGC
AAAGCCTTAGTGCTGGTTGACCCGCCGGATAAGTTGCAGCAAGGCGATAAATCCACTTGGCTGCTCAGCCAGTTATTACC
TTACCTGACGCAGGTGGAGTCTGAGCTGTTTATCATCTCGCCTTATTTTGTGCCGACACAATCGGGAACCGATCTGCTCA
CACTCTTGGCTCAATCCGGCAAGCGGGTGCGTGTGCTCACTAATAGTCTGGCGGCAACCGATGTGCTGGCGGTACATGCA
GGTTATAAGCAGTATCGTAAAGCCTTGCTGGCTGCGGGCGTTGAAATCTACGAAGTGAAAGCGCAGGCGGGAGAACGCTC
CCATAGCTGGCGCGGGAGTTCAAAGAGTAGTTTACATGCCAAATCATTTGTGTTTGATAATAAAAAGATATTTGTGGGGT
CGTTTAATTTTGATCCCCGCTCTGCAGCGGTCAATACCGAACTTGGACTGCTGATCACTCAGCCGCAATTAAGCGAGCAA
GTGACAAAAAATATTGAGGAAAAACTGGCGACCAGTACTTATCGACTTGCCTTGGAAGAGGGCGATCTCGTCTGGTGGGA
TGACGCCTCTAAACAGCGTTATGACAGTGAACCAGATGCCGGATTTTGGCGCGTATTTGTCGCCGATTTTCTAGGGTTAC
TGCCAATAGAGTCACAGTTATAA

Upstream 100 bases:

>100_bases
TTGCGTTTACTGCCGAAGGTTGGGATCAGTTTGCCTTCGATGTACTCTATGCGTTGCAGGACTAATCATTTGAATTAATA
TCAAAAAGGGATACCATTTA

Downstream 100 bases:

>100_bases
GCTAAGGTGACTAAATAGCGGTTTTAGCTGTCGCAACTCATTTTGCGAACCGCTATGATGAAAACAGAATAGATGATGAG
AATTTAGGTTTATGAAAAGC

Product: phospholipase D/transphosphatidylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 540; Mature: 539

Protein sequence:

>540_residues
MTIFGISSHHYCDVFAKIKTKDVWLKWWGYPVKTMVFRLSLPFWGLLLLLINGCSSMAELPAKSIETAYPLAENSTLYQV
VKSAMAQHPDQTGVFPLGDGVDAFVARLLLIESAVSSIDLQYYIYRNDETGRLLTWFLLDAAERGVRVRLLLDDMTSADM
DERLIALARHPNISIRLFNPSTERNYRGLAMLFGFSRLNHRMHNKSFTVDNVMTIVGGRNIGDEYFAADKNLEFGDFDLL
AMGDVVPQVSNEFDRYWNADSTHPIEVLSDQNPTQAELEALAKRVSEQREQSKSSEYVKRLAESQLLANLQSDNMAWFWG
KALVLVDPPDKLQQGDKSTWLLSQLLPYLTQVESELFIISPYFVPTQSGTDLLTLLAQSGKRVRVLTNSLAATDVLAVHA
GYKQYRKALLAAGVEIYEVKAQAGERSHSWRGSSKSSLHAKSFVFDNKKIFVGSFNFDPRSAAVNTELGLLITQPQLSEQ
VTKNIEEKLATSTYRLALEEGDLVWWDDASKQRYDSEPDAGFWRVFVADFLGLLPIESQL

Sequences:

>Translated_540_residues
MTIFGISSHHYCDVFAKIKTKDVWLKWWGYPVKTMVFRLSLPFWGLLLLLINGCSSMAELPAKSIETAYPLAENSTLYQV
VKSAMAQHPDQTGVFPLGDGVDAFVARLLLIESAVSSIDLQYYIYRNDETGRLLTWFLLDAAERGVRVRLLLDDMTSADM
DERLIALARHPNISIRLFNPSTERNYRGLAMLFGFSRLNHRMHNKSFTVDNVMTIVGGRNIGDEYFAADKNLEFGDFDLL
AMGDVVPQVSNEFDRYWNADSTHPIEVLSDQNPTQAELEALAKRVSEQREQSKSSEYVKRLAESQLLANLQSDNMAWFWG
KALVLVDPPDKLQQGDKSTWLLSQLLPYLTQVESELFIISPYFVPTQSGTDLLTLLAQSGKRVRVLTNSLAATDVLAVHA
GYKQYRKALLAAGVEIYEVKAQAGERSHSWRGSSKSSLHAKSFVFDNKKIFVGSFNFDPRSAAVNTELGLLITQPQLSEQ
VTKNIEEKLATSTYRLALEEGDLVWWDDASKQRYDSEPDAGFWRVFVADFLGLLPIESQL
>Mature_539_residues
TIFGISSHHYCDVFAKIKTKDVWLKWWGYPVKTMVFRLSLPFWGLLLLLINGCSSMAELPAKSIETAYPLAENSTLYQVV
KSAMAQHPDQTGVFPLGDGVDAFVARLLLIESAVSSIDLQYYIYRNDETGRLLTWFLLDAAERGVRVRLLLDDMTSADMD
ERLIALARHPNISIRLFNPSTERNYRGLAMLFGFSRLNHRMHNKSFTVDNVMTIVGGRNIGDEYFAADKNLEFGDFDLLA
MGDVVPQVSNEFDRYWNADSTHPIEVLSDQNPTQAELEALAKRVSEQREQSKSSEYVKRLAESQLLANLQSDNMAWFWGK
ALVLVDPPDKLQQGDKSTWLLSQLLPYLTQVESELFIISPYFVPTQSGTDLLTLLAQSGKRVRVLTNSLAATDVLAVHAG
YKQYRKALLAAGVEIYEVKAQAGERSHSWRGSSKSSLHAKSFVFDNKKIFVGSFNFDPRSAAVNTELGLLITQPQLSEQV
TKNIEEKLATSTYRLALEEGDLVWWDDASKQRYDSEPDAGFWRVFVADFLGLLPIESQL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=469, Percent_Identity=41.1513859275053, Blast_Score=331, Evalue=6e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60926; Mature: 60795

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIFGISSHHYCDVFAKIKTKDVWLKWWGYPVKTMVFRLSLPFWGLLLLLINGCSSMAEL
CEEEECCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHCHHHHHHC
PAKSIETAYPLAENSTLYQVVKSAMAQHPDQTGVFPLGDGVDAFVARLLLIESAVSSIDL
CHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHCEE
QYYIYRNDETGRLLTWFLLDAAERGVRVRLLLDDMTSADMDERLIALARHPNISIRLFNP
EEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECC
STERNYRGLAMLFGFSRLNHRMHNKSFTVDNVMTIVGGRNIGDEYFAADKNLEFGDFDLL
CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHEEECCCCCCCHHHCCCCCCCCCCCCEE
AMGDVVPQVSNEFDRYWNADSTHPIEVLSDQNPTQAELEALAKRVSEQREQSKSSEYVKR
EHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LAESQLLANLQSDNMAWFWGKALVLVDPPDKLQQGDKSTWLLSQLLPYLTQVESELFIIS
HHHHHHHHHCCCCCEEEEECCEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEE
PYFVPTQSGTDLLTLLAQSGKRVRVLTNSLAATDVLAVHAGYKQYRKALLAAGVEIYEVK
CEEEECCCCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEE
AQAGERSHSWRGSSKSSLHAKSFVFDNKKIFVGSFNFDPRSAAVNTELGLLITQPQLSEQ
HHCCCCCCCCCCCCCCCCCHHHEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCHHHHH
VTKNIEEKLATSTYRLALEEGDLVWWDDASKQRYDSEPDAGFWRVFVADFLGLLPIESQL
HHHHHHHHHHHHHEEEEEECCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TIFGISSHHYCDVFAKIKTKDVWLKWWGYPVKTMVFRLSLPFWGLLLLLINGCSSMAEL
EEEECCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHCHHHHHHC
PAKSIETAYPLAENSTLYQVVKSAMAQHPDQTGVFPLGDGVDAFVARLLLIESAVSSIDL
CHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHCEE
QYYIYRNDETGRLLTWFLLDAAERGVRVRLLLDDMTSADMDERLIALARHPNISIRLFNP
EEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECC
STERNYRGLAMLFGFSRLNHRMHNKSFTVDNVMTIVGGRNIGDEYFAADKNLEFGDFDLL
CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHEEECCCCCCCHHHCCCCCCCCCCCCEE
AMGDVVPQVSNEFDRYWNADSTHPIEVLSDQNPTQAELEALAKRVSEQREQSKSSEYVKR
EHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LAESQLLANLQSDNMAWFWGKALVLVDPPDKLQQGDKSTWLLSQLLPYLTQVESELFIIS
HHHHHHHHHCCCCCEEEEECCEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEE
PYFVPTQSGTDLLTLLAQSGKRVRVLTNSLAATDVLAVHAGYKQYRKALLAAGVEIYEVK
CEEEECCCCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEE
AQAGERSHSWRGSSKSSLHAKSFVFDNKKIFVGSFNFDPRSAAVNTELGLLITQPQLSEQ
HHCCCCCCCCCCCCCCCCCHHHEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCHHHHH
VTKNIEEKLATSTYRLALEEGDLVWWDDASKQRYDSEPDAGFWRVFVADFLGLLPIESQL
HHHHHHHHHHHHHEEEEEECCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]