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The map label for this gene is rfaH [H]

Identifier: 113969657

GI number: 113969657

Start: 1522031

End: 1522531

Strand: Direct

Name: rfaH [H]

Synonym: Shewmr4_1314

Alternate gene names: 113969657

Gene position: 1522031-1522531 (Clockwise)

Preceding gene: 113969655

Following gene: 113969658

Centisome position: 32.34

GC content: 41.12

Gene sequence:

>501_bases
ATGAAGGCATGGTACCTTTTGTATTGTAAACCTCGTAGTGAAGCGAGGGCACAACAGAACTTAGCACTTCAAAATTTAGA
AACATACTTACCGATGGTTTCTGAAGAAAAATCTCAACGCGGGCAGAAGCGGATCTGTCGTGTACCTCTATTCCCAAATT
ATCTGTTCATCAATTTCGACCCAAGCCAAACCAGTGTTAAGCAGGTCAACTCTACTCGCGGCGTGAGCCGAATCGTCAAT
TGTCAGGAAAAAATGACGCCTATAGACGATCGTATTATTCACGCTATTCGCATGAAAGAATTAACGCCTTCCCAAGCGGT
TTTAGACCACGAACTAGAACTAAAAACCGGGGAAAAAATTCGCTTTAAAGATGGGCCATTTATTGATTTAGAAGGCATTT
TTCAAGAAAAATGCCCAAACAAACGTTGCCAAGTTTTATTTAATATCATGGGGCAAATCAAAACCTTAACAGTTCCAATG
CAATCTGTTGAGCGCGTGTGA

Upstream 100 bases:

>100_bases
TCTATTGAGTCAAAAAACTGCTTCCATCCATCTTCACAACTTTGCTATGATTGCCAGCCGTGAATGGACATCACTTAACA
TAGGGTAGTGAGATTAGTAG

Downstream 100 bases:

>100_bases
TTTATTAACTATTTCACTTTGCTGGTTTAGGATTTTAACCTAGAGACGTGTAAGAAATTTGCTATAAGTTGAGTTTATAA
AATTTAAACAAGATTAGGGT

Product: transcription antitermination protein nusG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGQKRICRVPLFPNYLFINFDPSQTSVKQVNSTRGVSRIVN
CQEKMTPIDDRIIHAIRMKELTPSQAVLDHELELKTGEKIRFKDGPFIDLEGIFQEKCPNKRCQVLFNIMGQIKTLTVPM
QSVERV

Sequences:

>Translated_166_residues
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGQKRICRVPLFPNYLFINFDPSQTSVKQVNSTRGVSRIVN
CQEKMTPIDDRIIHAIRMKELTPSQAVLDHELELKTGEKIRFKDGPFIDLEGIFQEKCPNKRCQVLFNIMGQIKTLTVPM
QSVERV
>Mature_166_residues
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGQKRICRVPLFPNYLFINFDPSQTSVKQVNSTRGVSRIVN
CQEKMTPIDDRIIHAIRMKELTPSQAVLDHELELKTGEKIRFKDGPFIDLEGIFQEKCPNKRCQVLFNIMGQIKTLTVPM
QSVERV

Specific function: Transcriptional activator of hemolysin synthesis and secretion, also required for expression of sex factor and lipopolysaccharide biosynthesis genes. Transcriptional activator of rfaD/htrM and htrL [H]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790276, Length=152, Percent_Identity=32.8947368421053, Blast_Score=94, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005824
- InterPro:   IPR010215
- InterPro:   IPR006645
- InterPro:   IPR014722 [H]

Pfam domain/function: PF02357 NusG [H]

EC number: NA

Molecular weight: Translated: 19302; Mature: 19302

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGQKRICRVPLFPNYLFINFD
CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCCCCEEEEEEC
PSQTSVKQVNSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQAVLDHELELKTGEKI
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCEEECCCCEE
RFKDGPFIDLEGIFQEKCPNKRCQVLFNIMGQIKTLTVPMQSVERV
EECCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHEEEECHHHHCCC
>Mature Secondary Structure
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGQKRICRVPLFPNYLFINFD
CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCCCCEEEEEEC
PSQTSVKQVNSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQAVLDHELELKTGEKI
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCEEECCCCEE
RFKDGPFIDLEGIFQEKCPNKRCQVLFNIMGQIKTLTVPMQSVERV
EECCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHEEEECHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]