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The map label for this gene is fliN [H]

Identifier: 113969633

GI number: 113969633

Start: 1498269

End: 1498643

Strand: Direct

Name: fliN [H]

Synonym: Shewmr4_1290

Alternate gene names: 113969633

Gene position: 1498269-1498643 (Clockwise)

Preceding gene: 113969632

Following gene: 113969634

Centisome position: 31.84

GC content: 49.87

Gene sequence:

>375_bases
ATGAGTACAGATGATGATTGGGCAGCGGCCATGGCCGAGCAGGCATTGGAAGAGGCTAATGCCATTGACCTTGACGAGCT
GGTAGACGACTCGCAGCCAATTAGTAAGGCCGAAGCCGCTAAACTAGACACTATTTTAGATATCCCGGTGACGATTTCGA
TGGAAGTTGGCCGCAGCTATATCAGCATTCGTAACCTGCTGCAGCTGAACCAAGGTTCTGTGGTCGAGTTGGATAGGGTG
GCGGGTGAGCCGCTCGATGTGATGGTGAATGGCACACTTATCGCCCATGGTGAGGTGGTTGTGGTTAACGATAAGTTTGG
TATTCGCCTAACGGATGTGATCAGTCAAACTGAGCGGATTAAAAAGCTTAAGTAA

Upstream 100 bases:

>100_bases
CGAAAAAATCCCACGTCCTGAAACGGTCAAATCCGAACTGCAATTAGTGACACGTAAAGGCAAAGCCAGAGACATATCCG
AATTATAAAGGTGAAGTGAG

Downstream 100 bases:

>100_bases
TTCATCGAACAGGACAAAGCCTGAAGGAGCGAGATGAGCACATCGGTCATACTCAGTCTAGTGCCAGCGACTCAGGCGAG
TGTTGCTGGCGTTGCCAACG

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 123

Protein sequence:

>124_residues
MSTDDDWAAAMAEQALEEANAIDLDELVDDSQPISKAEAAKLDTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRV
AGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK

Sequences:

>Translated_124_residues
MSTDDDWAAAMAEQALEEANAIDLDELVDDSQPISKAEAAKLDTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRV
AGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK
>Mature_123_residues
STDDDWAAAMAEQALEEANAIDLDELVDDSQPISKAEAAKLDTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVA
GEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=120, Percent_Identity=45, Blast_Score=109, Evalue=4e-26,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 13520; Mature: 13388

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDDDWAAAMAEQALEEANAIDLDELVDDSQPISKAEAAKLDTILDIPVTISMEVGRSY
CCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHCCEEEECCEEEEHHHCHHH
ISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERI
HHHHHHHHCCCCCEEEEHHHCCCCEEEEECCEEEECCEEEEEECCCCEEHHHHHHHHHHH
KKLK
HCCC
>Mature Secondary Structure 
STDDDWAAAMAEQALEEANAIDLDELVDDSQPISKAEAAKLDTILDIPVTISMEVGRSY
CCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHCCEEEECCEEEEHHHCHHH
ISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERI
HHHHHHHHCCCCCEEEEHHHCCCCEEEEECCEEEECCEEEEEECCCCEEHHHHHHHHHHH
KKLK
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]