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The map label for this gene is fliF [H]

Identifier: 113969625

GI number: 113969625

Start: 1489245

End: 1490930

Strand: Direct

Name: fliF [H]

Synonym: Shewmr4_1282

Alternate gene names: 113969625

Gene position: 1489245-1490930 (Clockwise)

Preceding gene: 113969624

Following gene: 113969626

Centisome position: 31.64

GC content: 50.47

Gene sequence:

>1686_bases
ATGATTGTCGGATCAAACGCCGGCGCAGTGGACCAAGGGGTCCAACAGGAAAATAAATCCGGCGTGCTGGGAAGTCTCGG
TGGCGTCGATATGATGCGTCAAATCACCATGATTTTAGCCCTCGCCATTTGTTTGGCGTTAGCCGTGTTCGTCATGATCT
GGGCACAGGAGCCTGAGTACCGTCCATTGGGTAAAATGGAAACTCAGGAAATGGTGCAAGTGCTCGACGTACTTGATAAA
AATAAGATCAAGTATCAAATCGATGTTGACGTCGTTAAGGTACCCGAAGACAAATATCAAGAAGTTAAAATGATGCTGAG
CCGTGCGGGTATTGATAGTGCCGCGGCCTCAAGCAAAGATTTTCTCACCCAAGACAGTGGTTTTGGCGTGAGCCAAAGAA
TGGAACAGGCTCGCCTCAAGCACAGCCAAGAAGAAAACCTCGCCCGCGCAATTGAACAACTGCAAAGTGTTAGCCGCGCC
AAAGTGATTTTAGCCCTACCCAAAGAAAACGTGTTTGCTCGCAACACTGCGCAGCCAAGTGCGACCGTTGTGATCAACAC
TCGCCGTGGTGGTTTAGGCCAAGGCGAGGTCGATGCTATTGTGGATATCGTCGCTTCCGCCGTTCAGGGCTTAGAGCCAT
CTCGCGTGACAGTTACAGATTCTAACGGCCGTTTACTGAACTCGGGTAGCCAAGATGGCGTATCTGCTAGGGCGCGTCGT
GAGCTTGAGTTAGTTCAACAGAAAGAAGCCGAATACCGCACTAAAATTGACTCTATTTTATCGCCCATTCTCGGGCCTGA
TAACTTCACTTCTCAAGTAGATGTGAGCATGGATTTCACTGCGGTCGAGCAAACCGCTAAGCGCTTCAACCCCGACTTAC
CGTCGCTGCGTAGCGAAATGACGGTCGAGAATAATTCGACTGGCGGTTCAACTGGCGGCATTCCTGGTGCCTTATCGAAT
CAACCCCCAATGGAATCTAATATTCCGCAGGAAGCAGATAAAGCGACGGAAAGTGTTACTGCTGGTAACTCCCACCGCGA
AGCGACCCGTAATTTTGAACTCGATACCACCATCAGCCATACCCGTCAGCAAATTGGCGTGGTGCGCCGCGTGAGTGTGT
CGGTTGCGGTGGACTTTAAACCGGGGGCGGCTGGGGAAAATGGCCAAGTGGCGCGCGTTGCCCGTACCGAGCAGGAGCTA
ACCAATATTCGCCGTTTACTGGAAGGCGCGGTAGGCTTTAGCGCGCAGCGTGGTGATGTGCTGGAGGTGGTTACTGTTCC
CTTTATGGATCAATTGGTTGAAGATGTACCTGCGCCTGAGCTTTGGGAGCAACCTTGGTTCTGGCGTGCGGTGAAGTTAG
GCGTTGGCGCTTTGGTTATCTTAGTGCTGATCCTTGCTGTAGTACGTCCAATGCTGAAACGCTTAATCTACCCAGATAAT
GTGAACATGCCAGAGGATTCAAGACTCGGTAATGAGTTGGCGGAGATTGAAGATCAATACGCCGCCGATACCTTAGGGAT
GCTCAATACCAAAGAAGCAGAGTATAGTTATGCCGACGATGGCTCAATTCTTATCCCTAATCTGCATAAAGATGATGATA
TGATTAAAGCTATCCGTGCGCTTGTGGCCAATGAGCCCGAGCTTTCTACCCAAGTCGTGAAAAACTGGTTACAAGACAAT
GGCTGA

Upstream 100 bases:

>100_bases
AAGTGCGCAATAAGCTCGTTGAAGCTTATAAAGAAATAATGAGCATGCCTGTTTAGGCCTTGAATAACGCAATTAGCAGG
TACTAATCGTGAGCACAGAA

Downstream 100 bases:

>100_bases
GAATAAATCAAAAGACGCCGCTGAAGCCCCAAGCTTCAATATTAAGGATCTCAGTGGCATCGAAAAAACGGCGATTTTAC
TGTTAAGTTTGAGTGAAGCC

Product: flagellar MS-ring protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 561; Mature: 561

Protein sequence:

>561_residues
MIVGSNAGAVDQGVQQENKSGVLGSLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPLGKMETQEMVQVLDVLDK
NKIKYQIDVDVVKVPEDKYQEVKMMLSRAGIDSAAASSKDFLTQDSGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRA
KVILALPKENVFARNTAQPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARR
ELELVQQKEAEYRTKIDSILSPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVENNSTGGSTGGIPGALSN
QPPMESNIPQEADKATESVTAGNSHREATRNFELDTTISHTRQQIGVVRRVSVSVAVDFKPGAAGENGQVARVARTEQEL
TNIRRLLEGAVGFSAQRGDVLEVVTVPFMDQLVEDVPAPELWEQPWFWRAVKLGVGALVILVLILAVVRPMLKRLIYPDN
VNMPEDSRLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRALVANEPELSTQVVKNWLQDN
G

Sequences:

>Translated_561_residues
MIVGSNAGAVDQGVQQENKSGVLGSLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPLGKMETQEMVQVLDVLDK
NKIKYQIDVDVVKVPEDKYQEVKMMLSRAGIDSAAASSKDFLTQDSGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRA
KVILALPKENVFARNTAQPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARR
ELELVQQKEAEYRTKIDSILSPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVENNSTGGSTGGIPGALSN
QPPMESNIPQEADKATESVTAGNSHREATRNFELDTTISHTRQQIGVVRRVSVSVAVDFKPGAAGENGQVARVARTEQEL
TNIRRLLEGAVGFSAQRGDVLEVVTVPFMDQLVEDVPAPELWEQPWFWRAVKLGVGALVILVLILAVVRPMLKRLIYPDN
VNMPEDSRLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRALVANEPELSTQVVKNWLQDN
G
>Mature_561_residues
MIVGSNAGAVDQGVQQENKSGVLGSLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPLGKMETQEMVQVLDVLDK
NKIKYQIDVDVVKVPEDKYQEVKMMLSRAGIDSAAASSKDFLTQDSGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRA
KVILALPKENVFARNTAQPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARR
ELELVQQKEAEYRTKIDSILSPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVENNSTGGSTGGIPGALSN
QPPMESNIPQEADKATESVTAGNSHREATRNFELDTTISHTRQQIGVVRRVSVSVAVDFKPGAAGENGQVARVARTEQEL
TNIRRLLEGAVGFSAQRGDVLEVVTVPFMDQLVEDVPAPELWEQPWFWRAVKLGVGALVILVLILAVVRPMLKRLIYPDN
VNMPEDSRLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRALVANEPELSTQVVKNWLQDN
G

Specific function: The M ring may be actively involved in energy transduction [H]

COG id: COG1766

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliF family [H]

Homologues:

Organism=Escherichia coli, GI1788248, Length=557, Percent_Identity=30.8797127468582, Blast_Score=214, Evalue=1e-56,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013556
- InterPro:   IPR000067
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]

EC number: NA

Molecular weight: Translated: 61248; Mature: 61248

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVGSNAGAVDQGVQQENKSGVLGSLGGVDMMRQITMILALAICLALAVFVMIWAQEPEY
CEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RPLGKMETQEMVQVLDVLDKNKIKYQIDVDVVKVPEDKYQEVKMMLSRAGIDSAAASSKD
CCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCHHHHHHHHHHHHHCCCCHHHCCCCH
FLTQDSGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTAQPS
HCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCEEEEEECCCCCEECCCCCCC
ATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARR
EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCHHHHHHH
ELELVQQKEAEYRTKIDSILSPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHCCCCCHHHHHHC
TVENNSTGGSTGGIPGALSNQPPMESNIPQEADKATESVTAGNSHREATRNFELDTTISH
EECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHH
TRQQIGVVRRVSVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDV
HHHHHHHHHEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
LEVVTVPFMDQLVEDVPAPELWEQPWFWRAVKLGVGALVILVLILAVVRPMLKRLIYPDN
EEHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VNMPEDSRLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRA
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHH
LVANEPELSTQVVKNWLQDNG
HHCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MIVGSNAGAVDQGVQQENKSGVLGSLGGVDMMRQITMILALAICLALAVFVMIWAQEPEY
CEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RPLGKMETQEMVQVLDVLDKNKIKYQIDVDVVKVPEDKYQEVKMMLSRAGIDSAAASSKD
CCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCHHHHHHHHHHHHHCCCCHHHCCCCH
FLTQDSGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTAQPS
HCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCEEEEEECCCCCEECCCCCCC
ATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARR
EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCHHHHHHH
ELELVQQKEAEYRTKIDSILSPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHCCCCCHHHHHHC
TVENNSTGGSTGGIPGALSNQPPMESNIPQEADKATESVTAGNSHREATRNFELDTTISH
EECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHH
TRQQIGVVRRVSVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDV
HHHHHHHHHEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
LEVVTVPFMDQLVEDVPAPELWEQPWFWRAVKLGVGALVILVLILAVVRPMLKRLIYPDN
EEHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VNMPEDSRLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRA
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHH
LVANEPELSTQVVKNWLQDNG
HHCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8675317; 10984043 [H]