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The map label for this gene is yeeY [H]

Identifier: 113969566

GI number: 113969566

Start: 1420376

End: 1421269

Strand: Direct

Name: yeeY [H]

Synonym: Shewmr4_1222

Alternate gene names: 113969566

Gene position: 1420376-1421269 (Clockwise)

Preceding gene: 113969563

Following gene: 113969569

Centisome position: 30.18

GC content: 53.24

Gene sequence:

>894_bases
ATGTTACCTGTGATGAGTCTAGATGGCTTGATAGTGCTCGATGCTATTGATAAAAAAGGAAGTTTTTCGGCTGCGGCCGA
TTCCTTATTCCGGGTGCCATCGGCGCTGACCTACACAGTGCAGAAATTAGAGAGCGACTTAGGGGTAAAATTATTTGAAC
GTAAGGGCCAGCGCGCGGAACTGACCTTAGTTGGCCAGCTAGTATTACGCCAAGGGCGGGAGATTTTAGCCGCCACCGCC
AGGCTTGAGGAGGCGGTTCGCCAACTCGAAACGGGCTGGGAGTCGGCATTAACCTTAGCCATAGATACTGTGGTGCCCGA
TTTACCACTGCTTAAACTGATTGCTGAATTTACCGAGTTAGGTAAACAGGTGACCATCAATATCACCGAGGAGTCATTGG
GTGGCGGTTGGGATGCGCTGTATTCGGGCCGCGCCGATATTGCCATTGGGGTCACGGGGGAGTTACCTAAGGGGCAATAT
CACTTAGTCGAAATCGGCATGCTTGAATTCGTGTTTGCCCTTGCGCCTCACCATCCCTTGGCACAGTTTGACCATCCCAT
CTCGACCGAAGCCCTGTTGCAATTTCCCTCCGTGGTGGTGGCTGACAGCTCAACGGCGCTCGCGCAGCGCTCCAGTGGGT
TGTTTGATAGTCGCCAAGTCATTCGCGTGCCGAACATGCAGACCAAGATTAAAGCCCAGCAACTTGGGCTGGGTGTGGGC
TATCTTCCGAAACATTTGATCCGCGAAGAACTCGCTTCAGGCGTATTAGTCGCGTGCAAGGTTGAGATCCCAAGACCGGC
GCAGCCGGTGTTTCTCGCATGGCGCAAGGGAAATAAAGGCAAAGCGCAGGCGTGGTTTGCCGAACGTTTACCCCATTGCG
ACTGGTTGTTTTAG

Upstream 100 bases:

>100_bases
GTTAATCTCTCCATTGGTTTACAGTCTAGACTTGACCTGATGGAAAGAAAATCGGAACCTTTTCAAGGTTTATTTCAAAA
AATTTGAACAAGAGGTGGCT

Downstream 100 bases:

>100_bases
TGAGATGTCGATAGTGCGTTTGGCTACTGGATTGAGTGAATCACAGTACTTAACCATTGCTAGGGCGTGTTGACGTTTCG
AGATTAAATTTTGTTCGTTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MLPVMSLDGLIVLDAIDKKGSFSAAADSLFRVPSALTYTVQKLESDLGVKLFERKGQRAELTLVGQLVLRQGREILAATA
RLEEAVRQLETGWESALTLAIDTVVPDLPLLKLIAEFTELGKQVTINITEESLGGGWDALYSGRADIAIGVTGELPKGQY
HLVEIGMLEFVFALAPHHPLAQFDHPISTEALLQFPSVVVADSSTALAQRSSGLFDSRQVIRVPNMQTKIKAQQLGLGVG
YLPKHLIREELASGVLVACKVEIPRPAQPVFLAWRKGNKGKAQAWFAERLPHCDWLF

Sequences:

>Translated_297_residues
MLPVMSLDGLIVLDAIDKKGSFSAAADSLFRVPSALTYTVQKLESDLGVKLFERKGQRAELTLVGQLVLRQGREILAATA
RLEEAVRQLETGWESALTLAIDTVVPDLPLLKLIAEFTELGKQVTINITEESLGGGWDALYSGRADIAIGVTGELPKGQY
HLVEIGMLEFVFALAPHHPLAQFDHPISTEALLQFPSVVVADSSTALAQRSSGLFDSRQVIRVPNMQTKIKAQQLGLGVG
YLPKHLIREELASGVLVACKVEIPRPAQPVFLAWRKGNKGKAQAWFAERLPHCDWLF
>Mature_297_residues
MLPVMSLDGLIVLDAIDKKGSFSAAADSLFRVPSALTYTVQKLESDLGVKLFERKGQRAELTLVGQLVLRQGREILAATA
RLEEAVRQLETGWESALTLAIDTVVPDLPLLKLIAEFTELGKQVTINITEESLGGGWDALYSGRADIAIGVTGELPKGQY
HLVEIGMLEFVFALAPHHPLAQFDHPISTEALLQFPSVVVADSSTALAQRSSGLFDSRQVIRVPNMQTKIKAQQLGLGVG
YLPKHLIREELASGVLVACKVEIPRPAQPVFLAWRKGNKGKAQAWFAERLPHCDWLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=285, Percent_Identity=39.6491228070175, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI1787949, Length=283, Percent_Identity=36.0424028268551, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1789492, Length=288, Percent_Identity=34.0277777777778, Blast_Score=167, Evalue=7e-43,
Organism=Escherichia coli, GI1786508, Length=295, Percent_Identity=29.1525423728814, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1786713, Length=270, Percent_Identity=32.2222222222222, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI87082132, Length=261, Percent_Identity=23.7547892720307, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87081904, Length=277, Percent_Identity=28.158844765343, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI145693105, Length=232, Percent_Identity=25.4310344827586, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32469; Mature: 32469

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPVMSLDGLIVLDAIDKKGSFSAAADSLFRVPSALTYTVQKLESDLGVKLFERKGQRAE
CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHCCCCCEE
LTLVGQLVLRQGREILAATARLEEAVRQLETGWESALTLAIDTVVPDLPLLKLIAEFTEL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHC
GKQVTINITEESLGGGWDALYSGRADIAIGVTGELPKGQYHLVEIGMLEFVFALAPHHPL
CCEEEEEEEHHCCCCCHHHHHCCCCCEEEEECCCCCCCCEEEEEHHHHHHHHHHCCCCCH
AQFDHPISTEALLQFPSVVVADSSTALAQRSSGLFDSRQVIRVPNMQTKIKAQQLGLGVG
HHCCCCCCHHHHHHCCCEEEECCCHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHCCCCC
YLPKHLIREELASGVLVACKVEIPRPAQPVFLAWRKGNKGKAQAWFAERLPHCDWLF
HHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLPVMSLDGLIVLDAIDKKGSFSAAADSLFRVPSALTYTVQKLESDLGVKLFERKGQRAE
CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHCCCCCEE
LTLVGQLVLRQGREILAATARLEEAVRQLETGWESALTLAIDTVVPDLPLLKLIAEFTEL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHC
GKQVTINITEESLGGGWDALYSGRADIAIGVTGELPKGQYHLVEIGMLEFVFALAPHHPL
CCEEEEEEEHHCCCCCHHHHHCCCCCEEEEECCCCCCCCEEEEEHHHHHHHHHHCCCCCH
AQFDHPISTEALLQFPSVVVADSSTALAQRSSGLFDSRQVIRVPNMQTKIKAQQLGLGVG
HHCCCCCCHHHHHHCCCEEEECCCHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHCCCCC
YLPKHLIREELASGVLVACKVEIPRPAQPVFLAWRKGNKGKAQAWFAERLPHCDWLF
HHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]