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The map label for this gene is ydfG [C]

Identifier: 113969511

GI number: 113969511

Start: 1373620

End: 1374420

Strand: Direct

Name: ydfG [C]

Synonym: Shewmr4_1167

Alternate gene names: 113969511

Gene position: 1373620-1374420 (Clockwise)

Preceding gene: 113969510

Following gene: 113969512

Centisome position: 29.19

GC content: 51.94

Gene sequence:

>801_bases
ATGACCTCGGTACAGATCCACAAAATCAACACTGTGCTGATCACAGGGGCAAGCTCGGGGATTGGGCTGCAATTAGCCAA
GGATTATCTCGCCGCTGGTTGGCATGTGATTGCCTGCGGCCGAGATAAAGCCAAGCTCGATGCACTTGCCGAAACCGTGC
TGATTGGGGCGACTTGCATCAGCTTTGATATTAATGAGCGCAGCCAAGTCCAAGAGAATGCTCTCCGTATCAAAGATTTA
CTGGCTCAGTGCGCCTGTCAGCTGGATTTAGTAGTCCTTAATGCGGGTGGCTGCGAGTATATCGATGACGCTAAACACTT
CGACGACAGATTGTTTGAGCGTGTCGTGCACACCAATCTGATAGCCATGGGCTACTGTCTCGGCGCGTTTTTACCTTTAA
TGCCAAGAGGCGCGCGCTTGGCACTGATGAGTTCGAGCGCAACGTATTTAGCCTTTCCCCGTGCGGAGGCCTATGGCGCT
TCTAAGGCGGGCGTGCAGTACTTAGCCGCTAGCCTGAGGCTCGATCTTGCTCAACACGGGATCTCTGTGAGTGTGATTTG
CCCAGGATTTGTGGCGACGCCTCTAACAGCCAAGAATGATTTTGCCATGCCGATGCAAGTCGATGTAAAGGCGGCGTCAA
CGGCAATTCGCCGTGGGCTCTCGCGCGGCGTAACCGAGATCCATTTCCCCAAACGATTTACTTATTTATTGAAATTGATG
TCATTTCTACCAGCCTTGGTTTGGCAAAAAATGATCCAACGGGATAACCAGCCAAGGGCGCTTAAGGATGCAGGACGATG
A

Upstream 100 bases:

>100_bases
ACTTTCACCGGGATTATTTCGACTTAGGGCAAATGCTGTATGAGCATTTGCCTTGCATGGGCGGTCTCATTCGCCTGCTT
AAAGACAGGGCGGCAAAGTG

Downstream 100 bases:

>100_bases
AAAATATTGCCATTGTAGGGACGGGAATTTCAGGGCTGACCTGTGGCTATCTACTCAGCCAATCCCACAAGGTTACTGTG
TTTGAGGCCAATGACTATAT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MTSVQIHKINTVLITGASSGIGLQLAKDYLAAGWHVIACGRDKAKLDALAETVLIGATCISFDINERSQVQENALRIKDL
LAQCACQLDLVVLNAGGCEYIDDAKHFDDRLFERVVHTNLIAMGYCLGAFLPLMPRGARLALMSSSATYLAFPRAEAYGA
SKAGVQYLAASLRLDLAQHGISVSVICPGFVATPLTAKNDFAMPMQVDVKAASTAIRRGLSRGVTEIHFPKRFTYLLKLM
SFLPALVWQKMIQRDNQPRALKDAGR

Sequences:

>Translated_266_residues
MTSVQIHKINTVLITGASSGIGLQLAKDYLAAGWHVIACGRDKAKLDALAETVLIGATCISFDINERSQVQENALRIKDL
LAQCACQLDLVVLNAGGCEYIDDAKHFDDRLFERVVHTNLIAMGYCLGAFLPLMPRGARLALMSSSATYLAFPRAEAYGA
SKAGVQYLAASLRLDLAQHGISVSVICPGFVATPLTAKNDFAMPMQVDVKAASTAIRRGLSRGVTEIHFPKRFTYLLKLM
SFLPALVWQKMIQRDNQPRALKDAGR
>Mature_265_residues
TSVQIHKINTVLITGASSGIGLQLAKDYLAAGWHVIACGRDKAKLDALAETVLIGATCISFDINERSQVQENALRIKDLL
AQCACQLDLVVLNAGGCEYIDDAKHFDDRLFERVVHTNLIAMGYCLGAFLPLMPRGARLALMSSSATYLAFPRAEAYGAS
KAGVQYLAASLRLDLAQHGISVSVICPGFVATPLTAKNDFAMPMQVDVKAASTAIRRGLSRGVTEIHFPKRFTYLLKLMS
FLPALVWQKMIQRDNQPRALKDAGR

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=196, Percent_Identity=31.6326530612245, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI19923817, Length=194, Percent_Identity=26.8041237113402, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1787820, Length=183, Percent_Identity=28.9617486338798, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082100, Length=195, Percent_Identity=31.7948717948718, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786701, Length=189, Percent_Identity=29.1005291005291, Blast_Score=64, Evalue=8e-12,
Organism=Drosophila melanogaster, GI21358495, Length=195, Percent_Identity=30.2564102564103, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24643142, Length=188, Percent_Identity=29.2553191489362, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI28571526, Length=195, Percent_Identity=30.2564102564103, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28940; Mature: 28809

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSVQIHKINTVLITGASSGIGLQLAKDYLAAGWHVIACGRDKAKLDALAETVLIGATCI
CCCEEEEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHEE
SFDINERSQVQENALRIKDLLAQCACQLDLVVLNAGGCEYIDDAKHFDDRLFERVVHTNL
EEECCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
IAMGYCLGAFLPLMPRGARLALMSSSATYLAFPRAEAYGASKAGVQYLAASLRLDLAQHG
HHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHCC
ISVSVICPGFVATPLTAKNDFAMPMQVDVKAASTAIRRGLSRGVTEIHFPKRFTYLLKLM
CEEEEECCCHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHH
SFLPALVWQKMIQRDNQPRALKDAGR
HHHHHHHHHHHHHCCCCCCHHHCCCC
>Mature Secondary Structure 
TSVQIHKINTVLITGASSGIGLQLAKDYLAAGWHVIACGRDKAKLDALAETVLIGATCI
CCEEEEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHEE
SFDINERSQVQENALRIKDLLAQCACQLDLVVLNAGGCEYIDDAKHFDDRLFERVVHTNL
EEECCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
IAMGYCLGAFLPLMPRGARLALMSSSATYLAFPRAEAYGASKAGVQYLAASLRLDLAQHG
HHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHCC
ISVSVICPGFVATPLTAKNDFAMPMQVDVKAASTAIRRGLSRGVTEIHFPKRFTYLLKLM
CEEEEECCCHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHH
SFLPALVWQKMIQRDNQPRALKDAGR
HHHHHHHHHHHHHCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1730672 [H]