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The map label for this gene is ycgE [H]

Identifier: 113969508

GI number: 113969508

Start: 1370569

End: 1371654

Strand: Direct

Name: ycgE [H]

Synonym: Shewmr4_1164

Alternate gene names: 113969508

Gene position: 1370569-1371654 (Clockwise)

Preceding gene: 113969507

Following gene: 113969509

Centisome position: 29.12

GC content: 49.82

Gene sequence:

>1086_bases
ATGAAACAACATGATTCAAAGATTGAGGCCGAAAACCTCGAGAGTCGCGAGCTGCTCCCGATAGGGGAAGTGTCGCTACT
CACAGGGGTTAACGCGGTAACACTAAGAGCATGGCAACGGCGCTTTGGGCTGGTGATCCCTGCACGTACGCCTAAGGGCC
ATAGGTTATACACACCTGAAAATATTCAACAAATCCATGAGATCAATGCATGGTTAGCCAAGGGGGTCGCCATCAGTAAG
GTCAAACCGTTACTGATGAGTTCAGCTCGTGCGACCGAGGATGACCATACTACACTGCAAGAGGGGGATTTGTGGCAGGA
GCAGATCACAGCTTTAAATAGTGCGCTGTTTGAACTGGATCAATCAAAGCTGCACCAAATCCTTGATGAAGCCCTTGGCT
TATATCCCTTTCAATTAGTGAAACAAAAATTGTTGCTGGCTTGGATGGCGCAGTTACCTGCTTTGCTTGAGCCTCGTTTA
GATGCCGAGCTGTTGCTTGCATGGCTAGAAAGTGAGTTAGCCAGTCGCATCGGAGGGCGCGCCAGTTTTGCCGGGCAGGC
CAGTTTGGCGCAAATCGGTGTCGTGTGTTTGCCATCTATCCAAGGGCAAAAAACGGCAGAGCTGCACGCGGGTCATTCGA
ACATGATTCACTCGAGCGCAAGCAACTCAAGCACAAGCAACTCAAGCATAAGCAACTTGAGTATGACTAATCGCTTGTAT
AGTCTGGTTTTACGCTTAGAGCTTGCCGAGTTAAGAGTGTCAGTCATTCATCTTGGCGTACTCGACACCACAAGTCTTGG
GCTTATCAATAATCGACTCAAGGTAGATGCACTCTTGCTAGTGCCTGAGGCGAATCATCCACCATCGAAAATCTTCGAGC
TGCAAAGCTTGCTCGAGCAAATGCCACTTTCCTGTTATCTCATCGGCCCCTTTGCACTGACTCTCACGGCCTTATCAGCG
TTTATGGCGCCAGACTTGGCTGAATGGGTTAGCCAAGTTTCGGCGGCAAAAGAGCAACAGAAGAAACAGCTACGTAAGAA
CAAAAACGCGGCCGAAGCGGAGCAAGGAGGGCAAGCCGATGAGTGA

Upstream 100 bases:

>100_bases
GAATTAAAGCTGCGCTATGCCTATTAATACAGGTAGCTGGCGAAAATACGCACTTGAACGATTAGATAATGCATTAAGAT
TAACGAGTTAAGTGATTGAC

Downstream 100 bases:

>100_bases
TAATCAACCCCAAGCGGCAAAGCACACGTTGATGTGGTTTCGCCAGGATCTGCGCCTAACGGATAACCAAGCACTGACGG
CAGCCTGTGATTGGGTGCGG

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MKQHDSKIEAENLESRELLPIGEVSLLTGVNAVTLRAWQRRFGLVIPARTPKGHRLYTPENIQQIHEINAWLAKGVAISK
VKPLLMSSARATEDDHTTLQEGDLWQEQITALNSALFELDQSKLHQILDEALGLYPFQLVKQKLLLAWMAQLPALLEPRL
DAELLLAWLESELASRIGGRASFAGQASLAQIGVVCLPSIQGQKTAELHAGHSNMIHSSASNSSTSNSSISNLSMTNRLY
SLVLRLELAELRVSVIHLGVLDTTSLGLINNRLKVDALLLVPEANHPPSKIFELQSLLEQMPLSCYLIGPFALTLTALSA
FMAPDLAEWVSQVSAAKEQQKKQLRKNKNAAEAEQGGQADE

Sequences:

>Translated_361_residues
MKQHDSKIEAENLESRELLPIGEVSLLTGVNAVTLRAWQRRFGLVIPARTPKGHRLYTPENIQQIHEINAWLAKGVAISK
VKPLLMSSARATEDDHTTLQEGDLWQEQITALNSALFELDQSKLHQILDEALGLYPFQLVKQKLLLAWMAQLPALLEPRL
DAELLLAWLESELASRIGGRASFAGQASLAQIGVVCLPSIQGQKTAELHAGHSNMIHSSASNSSTSNSSISNLSMTNRLY
SLVLRLELAELRVSVIHLGVLDTTSLGLINNRLKVDALLLVPEANHPPSKIFELQSLLEQMPLSCYLIGPFALTLTALSA
FMAPDLAEWVSQVSAAKEQQKKQLRKNKNAAEAEQGGQADE
>Mature_361_residues
MKQHDSKIEAENLESRELLPIGEVSLLTGVNAVTLRAWQRRFGLVIPARTPKGHRLYTPENIQQIHEINAWLAKGVAISK
VKPLLMSSARATEDDHTTLQEGDLWQEQITALNSALFELDQSKLHQILDEALGLYPFQLVKQKLLLAWMAQLPALLEPRL
DAELLLAWLESELASRIGGRASFAGQASLAQIGVVCLPSIQGQKTAELHAGHSNMIHSSASNSSTSNSSISNLSMTNRLY
SLVLRLELAELRVSVIHLGVLDTTSLGLINNRLKVDALLLVPEANHPPSKIFELQSLLEQMPLSCYLIGPFALTLTALSA
FMAPDLAEWVSQVSAAKEQQKKQLRKNKNAAEAEQGGQADE

Specific function: Controls the expression of 6 small proteins that may play a role in biofilm maturation. Binds to and represses the operator of the ycgZ-ymgA-ariR-ymgC operon, it also regulates yliL and ynaK. Binding is antagonized by YcgF upon blue-light (470 nm) irradia

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787409, Length=81, Percent_Identity=53.0864197530864, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788448, Length=129, Percent_Identity=39.5348837209302, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 39646; Mature: 39646

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQHDSKIEAENLESRELLPIGEVSLLTGVNAVTLRAWQRRFGLVIPARTPKGHRLYTPE
CCCCCCCCCHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCEEEECCCCCCCCCCCHH
NIQQIHEINAWLAKGVAISKVKPLLMSSARATEDDHTTLQEGDLWQEQITALNSALFELD
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QSKLHQILDEALGLYPFQLVKQKLLLAWMAQLPALLEPRLDAELLLAWLESELASRIGGR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
ASFAGQASLAQIGVVCLPSIQGQKTAELHAGHSNMIHSSASNSSTSNSSISNLSMTNRLY
CCCCCCHHHHHHHHHEECCCCCCCCHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHH
SLVLRLELAELRVSVIHLGVLDTTSLGLINNRLKVDALLLVPEANHPPSKIFELQSLLEQ
HHHHHHHHHHHHHHHHHCCHHCCCHHHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHH
MPLSCYLIGPFALTLTALSAFMAPDLAEWVSQVSAAKEQQKKQLRKNKNAAEAEQGGQAD
CCCEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
E
C
>Mature Secondary Structure
MKQHDSKIEAENLESRELLPIGEVSLLTGVNAVTLRAWQRRFGLVIPARTPKGHRLYTPE
CCCCCCCCCHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCEEEECCCCCCCCCCCHH
NIQQIHEINAWLAKGVAISKVKPLLMSSARATEDDHTTLQEGDLWQEQITALNSALFELD
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QSKLHQILDEALGLYPFQLVKQKLLLAWMAQLPALLEPRLDAELLLAWLESELASRIGGR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
ASFAGQASLAQIGVVCLPSIQGQKTAELHAGHSNMIHSSASNSSTSNSSISNLSMTNRLY
CCCCCCHHHHHHHHHEECCCCCCCCHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHH
SLVLRLELAELRVSVIHLGVLDTTSLGLINNRLKVDALLLVPEANHPPSKIFELQSLLEQ
HHHHHHHHHHHHHHHHHCCHHCCCHHHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHH
MPLSCYLIGPFALTLTALSAFMAPDLAEWVSQVSAAKEQQKKQLRKNKNAAEAEQGGQAD
CCCEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]