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The map label for this gene is 113969477

Identifier: 113969477

GI number: 113969477

Start: 1334007

End: 1334696

Strand: Direct

Name: 113969477

Synonym: Shewmr4_1133

Alternate gene names: NA

Gene position: 1334007-1334696 (Clockwise)

Preceding gene: 113969473

Following gene: 113969479

Centisome position: 28.35

GC content: 46.09

Gene sequence:

>690_bases
ATGGAAACCGAACATATCAAAGTTAAAGTCTGGGATTTACCCACACGCTTTTTTCACTGGGGCATGGTGGCCCTCATGGC
CTTACTCTGGTGGAGCGCCGAAGTGGGTGAAATGCAATGGCACCAGATCTTTGCTTATAGTTTGTTGATCTTGATTGGCT
TTCGGCTTTTATGGGGCTTGATTGGCAGTGATACTGCGAGGTTTAGTCACTTCGTGCATCATCCCAAGGTGGTGTTTGAG
TATTTGAAAGACGTTCGCGCAAAGGGCGTGTCAGTGGTTTTAGGGCATAATCCGATGGGCGGTTATATGGTGATTGTGTT
GATTGCCATTATCAGCTTACAGCTAATCACTGGACTCTTTGCTACCGATGATGTGTTTACCGAAGGTCCACTGTACAGCT
ATGTGAGTGCTGATACAGCTTCGTTTCTCACTTGGTTGCATAAGATGAATTTCAACCTAATCTTAGCCTTGAGTGCCGTG
CATGTGTTGGCTGTCGTTGTACACGCGCTTAAAGGTGACAAGTTAGTGGGAGCCATGCTCAGCGGTTACAAACGGGTGTC
TAAAGTAGAGCACGCCAAATCTGAGACTCAGTTGGTGTTTAAATCACAGTGGTTGGCTTTAATTGTGCTGTTAATCATCG
CTGGAGTGGTGTTTACCTATTTGATGTGGCCCATAGTACAAGTGCTCTAG

Upstream 100 bases:

>100_bases
CAGTCTTTCCCATCATTTACCTATCTTTACTTTAAGTTTTTCATTAGTTCCCGATAAAATACCTTCACTTATTTCATTGC
TCAGTCGAGTGGCAGGTATT

Downstream 100 bases:

>100_bases
CAAGTGCTGAACATTAAAAAAGCCTGCATGTAGCAGGCTTTTTTATTAGACATTACAACGCGTAATTAGTCTTTTTTGTA
AACGTCGTGACAACCTTTAC

Product: cytochrome B561

Products: NA

Alternate protein names: Cytochrome; Nickel-Dependent Hydrogenase B-Type Cytochrome Subunit; Hydrogenase Cytochrome B-Type Subunit; B-Type Cytochrome; Cytochrome B/B6 Domain; Nickel-Dependent Hydrogenase Cytochrome B Subunit; Hydrogenase Cytochrome B-Type; Hydrogenase Cytochrome B-Type Subunit Protein; Nickel-Dependent Hydrogenase; Cytochrome B Oxidoreductase Protein; Integral Membrane Protein; Cytochrome C Family Protein; Ni/Fe-Hydrogenase 1 B-Type Cytochrome Subunit

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
METEHIKVKVWDLPTRFFHWGMVALMALLWWSAEVGEMQWHQIFAYSLLILIGFRLLWGLIGSDTARFSHFVHHPKVVFE
YLKDVRAKGVSVVLGHNPMGGYMVIVLIAIISLQLITGLFATDDVFTEGPLYSYVSADTASFLTWLHKMNFNLILALSAV
HVLAVVVHALKGDKLVGAMLSGYKRVSKVEHAKSETQLVFKSQWLALIVLLIIAGVVFTYLMWPIVQVL

Sequences:

>Translated_229_residues
METEHIKVKVWDLPTRFFHWGMVALMALLWWSAEVGEMQWHQIFAYSLLILIGFRLLWGLIGSDTARFSHFVHHPKVVFE
YLKDVRAKGVSVVLGHNPMGGYMVIVLIAIISLQLITGLFATDDVFTEGPLYSYVSADTASFLTWLHKMNFNLILALSAV
HVLAVVVHALKGDKLVGAMLSGYKRVSKVEHAKSETQLVFKSQWLALIVLLIIAGVVFTYLMWPIVQVL
>Mature_229_residues
METEHIKVKVWDLPTRFFHWGMVALMALLWWSAEVGEMQWHQIFAYSLLILIGFRLLWGLIGSDTARFSHFVHHPKVVFE
YLKDVRAKGVSVVLGHNPMGGYMVIVLIAIISLQLITGLFATDDVFTEGPLYSYVSADTASFLTWLHKMNFNLILALSAV
HVLAVVVHALKGDKLVGAMLSGYKRVSKVEHAKSETQLVFKSQWLALIVLLIIAGVVFTYLMWPIVQVL

Specific function: Unknown

COG id: COG3658

COG function: function code C; Cytochrome b

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25865; Mature: 25865

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METEHIKVKVWDLPTRFFHWGMVALMALLWWSAEVGEMQWHQIFAYSLLILIGFRLLWGL
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IGSDTARFSHFVHHPKVVFEYLKDVRAKGVSVVLGHNPMGGYMVIVLIAIISLQLITGLF
HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
ATDDVFTEGPLYSYVSADTASFLTWLHKMNFNLILALSAVHVLAVVVHALKGDKLVGAML
HCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SGYKRVSKVEHAKSETQLVFKSQWLALIVLLIIAGVVFTYLMWPIVQVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
METEHIKVKVWDLPTRFFHWGMVALMALLWWSAEVGEMQWHQIFAYSLLILIGFRLLWGL
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IGSDTARFSHFVHHPKVVFEYLKDVRAKGVSVVLGHNPMGGYMVIVLIAIISLQLITGLF
HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
ATDDVFTEGPLYSYVSADTASFLTWLHKMNFNLILALSAVHVLAVVVHALKGDKLVGAML
HCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SGYKRVSKVEHAKSETQLVFKSQWLALIVLLIIAGVVFTYLMWPIVQVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA