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The map label for this gene is torR [H]

Identifier: 113969391

GI number: 113969391

Start: 1222752

End: 1223462

Strand: Direct

Name: torR [H]

Synonym: Shewmr4_1047

Alternate gene names: 113969391

Gene position: 1222752-1223462 (Clockwise)

Preceding gene: 113969389

Following gene: 113969393

Centisome position: 25.98

GC content: 47.54

Gene sequence:

>711_bases
ATGGCCTATAGTGTGCTCGTTGTCGATGATGAAGCGGTTATTCGTGCTCGATTGAAAGGGTATTTTGAAAAAGAAGGTTA
CCGCGTTGTCGAGGCGGCCGATGGCGAGCAGATGTGGCACGAGTTTAATCGTCAACATATTGATTTAATTATGTTAGACA
TTAACCTACCCGGGGTGGATGGTTTAAGCTTAACCCGTGAGTTACGTAGCCGCTCCCATGTGGGGATTATCTTAGTTTCG
GGCCGTGATGAATCGATTGATAAAATCGTTGGCCTTGAGATGGGCGCCGATGATTATGTGACTAAGCCCTTCGAGCTTCG
GGAGCTATTGGTTAGGGTTAAAAACCTACTGTGGCGGATTTCTCTGGTAAAACAAGCCGAACAAGCGCTGGTGCAGGAAT
TATCCGAGCCCGATGATGTGATGAGTTTTGAAGGCTATCGGCTTGAATTAAACAGCCGTAAGTTGCGCCAAGGGGAGACG
CTTATCAAGCTCACTAAGGCCGAATTTGAGTTATTAACCGCCTTTGCTTTGCATCCGCAGCAGGTACTTTCCCGCGAGCG
CTTAATGCAGCAAACCAGCCATCGCAATCAGGATGTGAATGACAGAACCATAGATGTCATCATCCGCCGTCTGCGTAATA
AGCTCAATCCCGAACTCTTTGTTACTGTCCATGGTGAGGGTTATTTGTTTGCCGCTAAGGTGGATGATTGA

Upstream 100 bases:

>100_bases
GTGCGAGAAAGTAACGGAGATCGCATATTTTACCTTTTCCTCATATGCAAATATGAAAAAGTATGAATAATTCAGTTAAG
CAAAATAAGAGATGTAGAAC

Downstream 100 bases:

>100_bases
GCCGAGTGCTAATAAAGGCTACGGGCGCACTTGATACAGGGGATAAAAATCCGCTTCGGCGAGACTAAAGCTAAGATCCG
ATAGGGTATTTTGTGAGGTC

Product: DNA-binding transcriptional regulator TorR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MAYSVLVVDDEAVIRARLKGYFEKEGYRVVEAADGEQMWHEFNRQHIDLIMLDINLPGVDGLSLTRELRSRSHVGIILVS
GRDESIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRISLVKQAEQALVQELSEPDDVMSFEGYRLELNSRKLRQGET
LIKLTKAEFELLTAFALHPQQVLSRERLMQQTSHRNQDVNDRTIDVIIRRLRNKLNPELFVTVHGEGYLFAAKVDD

Sequences:

>Translated_236_residues
MAYSVLVVDDEAVIRARLKGYFEKEGYRVVEAADGEQMWHEFNRQHIDLIMLDINLPGVDGLSLTRELRSRSHVGIILVS
GRDESIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRISLVKQAEQALVQELSEPDDVMSFEGYRLELNSRKLRQGET
LIKLTKAEFELLTAFALHPQQVLSRERLMQQTSHRNQDVNDRTIDVIIRRLRNKLNPELFVTVHGEGYLFAAKVDD
>Mature_235_residues
AYSVLVVDDEAVIRARLKGYFEKEGYRVVEAADGEQMWHEFNRQHIDLIMLDINLPGVDGLSLTRELRSRSHVGIILVSG
RDESIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRISLVKQAEQALVQELSEPDDVMSFEGYRLELNSRKLRQGETL
IKLTKAEFELLTAFALHPQQVLSRERLMQQTSHRNQDVNDRTIDVIIRRLRNKLNPELFVTVHGEGYLFAAKVDD

Specific function: Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide (TMAO). Phosphorylated torR activates the transcription of the torCAD operon by binding to four decameric boxes located in the torCAD p

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1787229, Length=235, Percent_Identity=53.6170212765957, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI1790863, Length=239, Percent_Identity=42.2594142259414, Blast_Score=188, Evalue=3e-49,
Organism=Escherichia coli, GI1789809, Length=234, Percent_Identity=40.5982905982906, Blast_Score=164, Evalue=3e-42,
Organism=Escherichia coli, GI1786599, Length=240, Percent_Identity=37.0833333333333, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI1788394, Length=233, Percent_Identity=36.0515021459227, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1786911, Length=232, Percent_Identity=34.4827586206897, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1790860, Length=231, Percent_Identity=33.7662337662338, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787375, Length=232, Percent_Identity=34.051724137931, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1786784, Length=231, Percent_Identity=35.9307359307359, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI145693140, Length=240, Percent_Identity=32.5, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI87082012, Length=232, Percent_Identity=30.6034482758621, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI2367329, Length=233, Percent_Identity=34.7639484978541, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1790552, Length=230, Percent_Identity=28.695652173913, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1789402, Length=230, Percent_Identity=30, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1788550, Length=122, Percent_Identity=34.4262295081967, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788713, Length=114, Percent_Identity=35.0877192982456, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27245; Mature: 27113

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSVLVVDDEAVIRARLKGYFEKEGYRVVEAADGEQMWHEFNRQHIDLIMLDINLPGVD
CCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCEEEEEEEEECCCCCC
GLSLTRELRSRSHVGIILVSGRDESIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRI
HHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
SLVKQAEQALVQELSEPDDVMSFEGYRLELNSRKLRQGETLIKLTKAEFELLTAFALHPQ
HHHHHHHHHHHHHCCCCCHHHCCCCEEEEECCCHHHCCCHHEEHHHHHHHHHHHHHCCHH
QVLSRERLMQQTSHRNQDVNDRTIDVIIRRLRNKLNPELFVTVHGEGYLFAAKVDD
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECC
>Mature Secondary Structure 
AYSVLVVDDEAVIRARLKGYFEKEGYRVVEAADGEQMWHEFNRQHIDLIMLDINLPGVD
CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCEEEEEEEEECCCCCC
GLSLTRELRSRSHVGIILVSGRDESIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRI
HHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
SLVKQAEQALVQELSEPDDVMSFEGYRLELNSRKLRQGETLIKLTKAEFELLTAFALHPQ
HHHHHHHHHHHHHCCCCCHHHCCCCEEEEECCCHHHCCCHHEEHHHHHHHHHHHHHCCHH
QVLSRERLMQQTSHRNQDVNDRTIDVIIRRLRNKLNPELFVTVHGEGYLFAAKVDD
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]