Click here to switch to the map view.

The map label for this gene is yjjV [H]

Identifier: 113969378

GI number: 113969378

Start: 1206582

End: 1207349

Strand: Direct

Name: yjjV [H]

Synonym: Shewmr4_1034

Alternate gene names: 113969378

Gene position: 1206582-1207349 (Clockwise)

Preceding gene: 113969377

Following gene: 113969379

Centisome position: 25.64

GC content: 44.14

Gene sequence:

>768_bases
ATGATGCTAGATACTCATGCGCACCTCGATTTCGTTGAGTTTGATAGTGACCGCGAACAGGTCGTGCAGCGTATGCGACA
AGCGGGCATCGACAATCTGATCATCCCGGGAGTTTCTCCCGAGCATTGGCCAAAACAATTGGCGATTGCTGAACAATATC
AGTGTTATTTTGCCTTAGGGATCCATCCTTGGTTTTGCCCCGAAGATGTTGATAAGGCCATCACAGAATTAACATTTCAG
GTTTCTCAGTTACGAGAATGTCCCCGTTTTGTTGCTATTGGTGAATGTGGTTTAGACAAACTTTATGCTGATAATTGGAG
TCAGCAGTTAGCCTTTTTTGACGCGCAACTCACCCTTGCCCATGAGCTGAACCTGCCCGTTATTGTCCATGCCGTCAGAG
CTCACCAAGAAGTGTTATCCCATTTAAAACGCCATAAACTCGCCAAAGGTGGCGTAATACACGCCTTTTCTGGCAGCCCC
GATATTGCGACCGAATATATCAAGCTGGGTTTTAAGTTAGGAATTGGCGGATTAGTCATGAATCCTAATGCGAAAAAACT
GCTTAAAACCGTCAGCGAATTGCCCCTAGACAGCTTCCTACTTGAGACTGATTCTCCTGCCATGACCCCGTTAAATGTTA
TCGAAAAACGGAATCAACCCGCTAATGCTGTACTTTTTATAGACAAAATCGCAACTTTGCAAAAAAAATCTAGTGTTCTA
ATATCAGAACACTTGGTGTCAAATGCAATGCAACTGTTTGACCTTTAG

Upstream 100 bases:

>100_bases
TATGCCGCGATTGGAAGATCCGCCCTTAGCCCGTAATAAAGCGGATTGCCAAGTGACGACTCAAGCACCCAATGGAGAAA
CAAAATCGGAGTAACAATTG

Downstream 100 bases:

>100_bases
TTGTTTTTGGTTAAACAGGTGTAGGTCGCAATAGCATTTTGCTCTAAGCGGTTGAAATTAAACTCCAAAATTTTGATCAA
AACGACGATTTTCGACTTTC

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MMLDTHAHLDFVEFDSDREQVVQRMRQAGIDNLIIPGVSPEHWPKQLAIAEQYQCYFALGIHPWFCPEDVDKAITELTFQ
VSQLRECPRFVAIGECGLDKLYADNWSQQLAFFDAQLTLAHELNLPVIVHAVRAHQEVLSHLKRHKLAKGGVIHAFSGSP
DIATEYIKLGFKLGIGGLVMNPNAKKLLKTVSELPLDSFLLETDSPAMTPLNVIEKRNQPANAVLFIDKIATLQKKSSVL
ISEHLVSNAMQLFDL

Sequences:

>Translated_255_residues
MMLDTHAHLDFVEFDSDREQVVQRMRQAGIDNLIIPGVSPEHWPKQLAIAEQYQCYFALGIHPWFCPEDVDKAITELTFQ
VSQLRECPRFVAIGECGLDKLYADNWSQQLAFFDAQLTLAHELNLPVIVHAVRAHQEVLSHLKRHKLAKGGVIHAFSGSP
DIATEYIKLGFKLGIGGLVMNPNAKKLLKTVSELPLDSFLLETDSPAMTPLNVIEKRNQPANAVLFIDKIATLQKKSSVL
ISEHLVSNAMQLFDL
>Mature_255_residues
MMLDTHAHLDFVEFDSDREQVVQRMRQAGIDNLIIPGVSPEHWPKQLAIAEQYQCYFALGIHPWFCPEDVDKAITELTFQ
VSQLRECPRFVAIGECGLDKLYADNWSQQLAFFDAQLTLAHELNLPVIVHAVRAHQEVLSHLKRHKLAKGGVIHAFSGSP
DIATEYIKLGFKLGIGGLVMNPNAKKLLKTVSELPLDSFLLETDSPAMTPLNVIEKRNQPANAVLFIDKIATLQKKSSVL
ISEHLVSNAMQLFDL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349734, Length=268, Percent_Identity=30.9701492537313, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI110349730, Length=268, Percent_Identity=30.9701492537313, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI226061614, Length=256, Percent_Identity=29.6875, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI226061853, Length=274, Percent_Identity=31.021897810219, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI14042943, Length=267, Percent_Identity=23.9700374531835, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI226061595, Length=229, Percent_Identity=31.4410480349345, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI225903439, Length=250, Percent_Identity=24, Blast_Score=80, Evalue=1e-15,
Organism=Escherichia coli, GI87082439, Length=258, Percent_Identity=39.1472868217054, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI48994985, Length=270, Percent_Identity=30.3703703703704, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1787342, Length=261, Percent_Identity=28.735632183908, Blast_Score=103, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17559024, Length=222, Percent_Identity=29.2792792792793, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI71980746, Length=272, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24648690, Length=288, Percent_Identity=28.4722222222222, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24586117, Length=269, Percent_Identity=24.1635687732342, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI221330018, Length=269, Percent_Identity=24.1635687732342, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28604; Mature: 28604

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLDTHAHLDFVEFDSDREQVVQRMRQAGIDNLIIPGVSPEHWPKQLAIAEQYQCYFALG
CCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCEEEEEEC
IHPWFCPEDVDKAITELTFQVSQLRECPRFVAIGECGLDKLYADNWSQQLAFFDAQLTLA
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHCCHHHHHHHHHHEEEEE
HELNLPVIVHAVRAHQEVLSHLKRHKLAKGGVIHAFSGSPDIATEYIKLGFKLGIGGLVM
ECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEE
NPNAKKLLKTVSELPLDSFLLETDSPAMTPLNVIEKRNQPANAVLFIDKIATLQKKSSVL
CCCHHHHHHHHHHCCHHHEEEECCCCCCCHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHH
ISEHLVSNAMQLFDL
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MMLDTHAHLDFVEFDSDREQVVQRMRQAGIDNLIIPGVSPEHWPKQLAIAEQYQCYFALG
CCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCEEEEEEC
IHPWFCPEDVDKAITELTFQVSQLRECPRFVAIGECGLDKLYADNWSQQLAFFDAQLTLA
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHCCHHHHHHHHHHEEEEE
HELNLPVIVHAVRAHQEVLSHLKRHKLAKGGVIHAFSGSPDIATEYIKLGFKLGIGGLVM
ECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEE
NPNAKKLLKTVSELPLDSFLLETDSPAMTPLNVIEKRNQPANAVLFIDKIATLQKKSSVL
CCCHHHHHHHHHHCCHHHEEEECCCCCCCHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHH
ISEHLVSNAMQLFDL
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]