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The map label for this gene is 113969320

Identifier: 113969320

GI number: 113969320

Start: 1143142

End: 1144041

Strand: Direct

Name: 113969320

Synonym: Shewmr4_0976

Alternate gene names: NA

Gene position: 1143142-1144041 (Clockwise)

Preceding gene: 113969319

Following gene: 113969321

Centisome position: 24.29

GC content: 51.22

Gene sequence:

>900_bases
ATGCAATTAATGCGTTATTGCCTTTCTCCCAATAAGTTGGCTTGGCTGCGTCAGGAATTAGGCGAACATGCCGACGAGCT
TATCGCGGCGATGGATAAAGCTGGGAGTCAATATCTGGCTGGGTTAGCCGAGTCCCAAGCGGGGGACTTATCGGCAGCCG
ATTCGCAACTTAAGTTCCAATGGTTTCAGCAAAAAATCGCCTTAACGACGCGATTAACCGATGCCGAGCTGGCAAACCTC
GTACCACTGTCGCTGGTGGATATAAAGGGCGAAATGCGGGACGAAATGCGGGTGGAATTAGTCACGCCCGATACGCTTGC
CACCGCATTACAACAACTTAGCAGTGAGTCTGTGCTGGGGTTTGATACCGAAACGCGGGCAAGCTTTGAGCCGGGTGTTC
AACATCCCTTGAGCTTAGTGCAATTGGCGACCTCAGATACCTGCTATTTATTTCAGCGGGCGGTATTGGGTGAGAGGCTC
GCCGAGCTCAAACCTTTGCTCGAAAATGAGCGGATCCTCAAAGTGGGGATTGGATTAAGGGGCGATGGCCAAGCACTGAA
ACGGGATTGGGATATTCAGGTCTCCCCTCGACTCGATTTGAATTGGGCGATGGCGCAGCTCGGCGCTGGGAAGGAAATGG
GGACGCGGCAATTGGTGGCGGCATTACTGCATAAACGTATCGATAAACCTAAAAAAATTACCCTCTCGAATTGGCAACAG
GTGCCTTTATCCCAAGCGCAAATTCAGTACGCCGCCCTCGATACATTGGCGGCAAACCTCTGTTTTTGGCAGTTAATCGA
CAAGCTGCAAGGTTTTTATGGCAAAACGACCGTCGGTAATAAACCCTTATTGCCGCCGAGTTTAGCCGCACGACTCGCGA
GCTATTTTCATCCAGCTTAA

Upstream 100 bases:

>100_bases
TAGCTGATCCTTTTTTGATCCTTTATTGCTGATCAGCTAACCCGAGTTGCGCGAGTGCTAAGGTGCTCGCTGCGATTATT
TCAACGCTCAAGGACGAAGT

Downstream 100 bases:

>100_bases
GACTTGAGATAAGGCCGTAAAGATAAGGATTAGGGGGCAAGAGATGTTGGACGCGATTTGTGTACTCACAACCGAGGCAG
CGGCAGAGCACGCTTCGTCG

Product: 3'-5' exonuclease

Products: NA

Alternate protein names: 3-5' Exonuclease Domain Protein; 3- 5' Exonuclease Domain Protein; Ribonuclease D; 3 Exoribonuclease Family Protein; Exonuclease

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MQLMRYCLSPNKLAWLRQELGEHADELIAAMDKAGSQYLAGLAESQAGDLSAADSQLKFQWFQQKIALTTRLTDAELANL
VPLSLVDIKGEMRDEMRVELVTPDTLATALQQLSSESVLGFDTETRASFEPGVQHPLSLVQLATSDTCYLFQRAVLGERL
AELKPLLENERILKVGIGLRGDGQALKRDWDIQVSPRLDLNWAMAQLGAGKEMGTRQLVAALLHKRIDKPKKITLSNWQQ
VPLSQAQIQYAALDTLAANLCFWQLIDKLQGFYGKTTVGNKPLLPPSLAARLASYFHPA

Sequences:

>Translated_299_residues
MQLMRYCLSPNKLAWLRQELGEHADELIAAMDKAGSQYLAGLAESQAGDLSAADSQLKFQWFQQKIALTTRLTDAELANL
VPLSLVDIKGEMRDEMRVELVTPDTLATALQQLSSESVLGFDTETRASFEPGVQHPLSLVQLATSDTCYLFQRAVLGERL
AELKPLLENERILKVGIGLRGDGQALKRDWDIQVSPRLDLNWAMAQLGAGKEMGTRQLVAALLHKRIDKPKKITLSNWQQ
VPLSQAQIQYAALDTLAANLCFWQLIDKLQGFYGKTTVGNKPLLPPSLAARLASYFHPA
>Mature_299_residues
MQLMRYCLSPNKLAWLRQELGEHADELIAAMDKAGSQYLAGLAESQAGDLSAADSQLKFQWFQQKIALTTRLTDAELANL
VPLSLVDIKGEMRDEMRVELVTPDTLATALQQLSSESVLGFDTETRASFEPGVQHPLSLVQLATSDTCYLFQRAVLGERL
AELKPLLENERILKVGIGLRGDGQALKRDWDIQVSPRLDLNWAMAQLGAGKEMGTRQLVAALLHKRIDKPKKITLSNWQQ
VPLSQAQIQYAALDTLAANLCFWQLIDKLQGFYGKTTVGNKPLLPPSLAARLASYFHPA

Specific function: Unknown

COG id: COG0349

COG function: function code J; Ribonuclease D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI110735439, Length=155, Percent_Identity=35.4838709677419, Blast_Score=83, Evalue=4e-16,
Organism=Drosophila melanogaster, GI21356549, Length=199, Percent_Identity=29.6482412060301, Blast_Score=71, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33140; Mature: 33140

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLMRYCLSPNKLAWLRQELGEHADELIAAMDKAGSQYLAGLAESQAGDLSAADSQLKFQ
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHH
WFQQKIALTTRLTDAELANLVPLSLVDIKGEMRDEMRVELVTPDTLATALQQLSSESVLG
HHHHHHHHHHHCCHHHHHHHCCHHHHHCCHHHCCCCEEEEECCHHHHHHHHHHCCCCEEC
FDTETRASFEPGVQHPLSLVQLATSDTCYLFQRAVLGERLAELKPLLENERILKVGIGLR
CCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
GDGQALKRDWDIQVSPRLDLNWAMAQLGAGKEMGTRQLVAALLHKRIDKPKKITLSNWQQ
CCCHHHCCCCCEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCC
VPLSQAQIQYAALDTLAANLCFWQLIDKLQGFYGKTTVGNKPLLPPSLAARLASYFHPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MQLMRYCLSPNKLAWLRQELGEHADELIAAMDKAGSQYLAGLAESQAGDLSAADSQLKFQ
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHH
WFQQKIALTTRLTDAELANLVPLSLVDIKGEMRDEMRVELVTPDTLATALQQLSSESVLG
HHHHHHHHHHHCCHHHHHHHCCHHHHHCCHHHCCCCEEEEECCHHHHHHHHHHCCCCEEC
FDTETRASFEPGVQHPLSLVQLATSDTCYLFQRAVLGERLAELKPLLENERILKVGIGLR
CCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
GDGQALKRDWDIQVSPRLDLNWAMAQLGAGKEMGTRQLVAALLHKRIDKPKKITLSNWQQ
CCCHHHCCCCCEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCC
VPLSQAQIQYAALDTLAANLCFWQLIDKLQGFYGKTTVGNKPLLPPSLAARLASYFHPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA