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The map label for this gene is yeaM [H]

Identifier: 113969270

GI number: 113969270

Start: 1079954

End: 1080733

Strand: Direct

Name: yeaM [H]

Synonym: Shewmr4_0926

Alternate gene names: 113969270

Gene position: 1079954-1080733 (Clockwise)

Preceding gene: 113969267

Following gene: 113969272

Centisome position: 22.95

GC content: 50.9

Gene sequence:

>780_bases
ATGCGTCCCGTTTATCATCCGCTCAGGGCGGAACAAGCGCCTGTTGCCGATATTTTCTTTAACTATGAAGCTTTTCTCCC
TAATACCATCACCCCAAAACACAGCCACGCTTGGGGGCAACTGCAGCTGATCAGTGGCGGTATTATGGAGCTGCATGCCG
CTGGGCAGCGATTTTTATCGCCATCCCAATATGCGATTTGGGTGCCGGCGGGGATAGAACATGAGAGCTTTACTCGCCGC
AGTATCCATTATTGCTCGATGAATATAGTGGCAAATCGTGCGGGTGTTTTTCCGGAGGAGACTTGCCTGCTGGCGGTCAC
CCCCATAGCACAGGCGATCGTGAACGATCTAAGGGAGCGGCAAGTCCGAGTGGCCGAGAGCGAAGCGGATAAACGTCTGG
TTGAGGTGTTAATCGACCAGTTGATTTTAGGTCAGGCACAGCCGCAATTTTTACCCTCGAGTCGCGATAAATTATTACAG
CCCATTTTGCAGCAACTCGAACTCGACCCCGCCAGCCAAAAGAGCCTTAAGACCTGGGCGAGTGAGCTGCATACCACAGA
GCGCACTCTGGCTCGGCGTTGCCAAGACAGCCTTGGGATGAGTTTTACCGAGCTGCGACAGCGGCATCAGTTTATTTATT
CGTTACAGCTATTACGTGAAGGATTGGCAATCAAGGAAGTGGCGCTGACCTTGGGCTATAACCAAACCTCACCTTATATA
GTGATGTTTAAAAAATATGCCCAATATTCGCCTGAGCAATATCGCCGTCAACTGGGATAA

Upstream 100 bases:

>100_bases
AAAAGACAATGTCAGTTCGTCGGCGGACAATCCTTTTTCGGCTAAAGCCCCTGTATGCGCCCCGAATCGACTCGCTATTA
TGGAGTACAGTGGAGTGCTG

Downstream 100 bases:

>100_bases
AAAAGAGGGCGCGGTAGTCACCACGCCCTCTTACAAATAAAGAGAGGATTTAAGGGATTTTTTACACAGGGATTAATCGG
AGTTTTTCTGTCGATTCCGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MRPVYHPLRAEQAPVADIFFNYEAFLPNTITPKHSHAWGQLQLISGGIMELHAAGQRFLSPSQYAIWVPAGIEHESFTRR
SIHYCSMNIVANRAGVFPEETCLLAVTPIAQAIVNDLRERQVRVAESEADKRLVEVLIDQLILGQAQPQFLPSSRDKLLQ
PILQQLELDPASQKSLKTWASELHTTERTLARRCQDSLGMSFTELRQRHQFIYSLQLLREGLAIKEVALTLGYNQTSPYI
VMFKKYAQYSPEQYRRQLG

Sequences:

>Translated_259_residues
MRPVYHPLRAEQAPVADIFFNYEAFLPNTITPKHSHAWGQLQLISGGIMELHAAGQRFLSPSQYAIWVPAGIEHESFTRR
SIHYCSMNIVANRAGVFPEETCLLAVTPIAQAIVNDLRERQVRVAESEADKRLVEVLIDQLILGQAQPQFLPSSRDKLLQ
PILQQLELDPASQKSLKTWASELHTTERTLARRCQDSLGMSFTELRQRHQFIYSLQLLREGLAIKEVALTLGYNQTSPYI
VMFKKYAQYSPEQYRRQLG
>Mature_259_residues
MRPVYHPLRAEQAPVADIFFNYEAFLPNTITPKHSHAWGQLQLISGGIMELHAAGQRFLSPSQYAIWVPAGIEHESFTRR
SIHYCSMNIVANRAGVFPEETCLLAVTPIAQAIVNDLRERQVRVAESEADKRLVEVLIDQLILGQAQPQFLPSSRDKLLQ
PILQQLELDPASQKSLKTWASELHTTERTLARRCQDSLGMSFTELRQRHQFIYSLQLLREGLAIKEVALTLGYNQTSPYI
VMFKKYAQYSPEQYRRQLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=250, Percent_Identity=30.8, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29604; Mature: 29604

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPVYHPLRAEQAPVADIFFNYEAFLPNTITPKHSHAWGQLQLISGGIMELHAAGQRFLS
CCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCC
PSQYAIWVPAGIEHESFTRRSIHYCSMNIVANRAGVFPEETCLLAVTPIAQAIVNDLRER
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHH
QVRVAESEADKRLVEVLIDQLILGQAQPQFLPSSRDKLLQPILQQLELDPASQKSLKTWA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
SELHTTERTLARRCQDSLGMSFTELRQRHQFIYSLQLLREGLAIKEVALTLGYNQTSPYI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEE
VMFKKYAQYSPEQYRRQLG
EEEHHHHCCCHHHHHHHCC
>Mature Secondary Structure
MRPVYHPLRAEQAPVADIFFNYEAFLPNTITPKHSHAWGQLQLISGGIMELHAAGQRFLS
CCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCC
PSQYAIWVPAGIEHESFTRRSIHYCSMNIVANRAGVFPEETCLLAVTPIAQAIVNDLRER
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHH
QVRVAESEADKRLVEVLIDQLILGQAQPQFLPSSRDKLLQPILQQLELDPASQKSLKTWA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
SELHTTERTLARRCQDSLGMSFTELRQRHQFIYSLQLLREGLAIKEVALTLGYNQTSPYI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEE
VMFKKYAQYSPEQYRRQLG
EEEHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]