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The map label for this gene is oprF [H]

Identifier: 113969260

GI number: 113969260

Start: 1068976

End: 1070433

Strand: Direct

Name: oprF [H]

Synonym: Shewmr4_0916

Alternate gene names: 113969260

Gene position: 1068976-1070433 (Clockwise)

Preceding gene: 113969257

Following gene: 113969264

Centisome position: 22.71

GC content: 48.01

Gene sequence:

>1458_bases
ATGGGACATAAGACGTTATTAAGTGCTGTACTTTTGACTGCGACCTACGGTGTCGCTACTTTTGCGGTGAATGCTGAATC
GCTGTTTACTCCCTTTCCTGACGCCAAATCGCCTGAAGAAAAGCGCATCCACTTTACGCCCTTTGAACTTATCACCGCAG
TGAATGGTGACAAGTTCACTCTGTTGCCTGTATCGGGCAAATTGACTCGACAAAGCGTTGAGTTGCCAGCGGGGTATAGT
CCTGAACATGTGATCAATAACTATTTGGCACAGCTAAAAAAACTGAATGCTGAAGTGCTATTTAGCTGTCAGGCCGCCAG
CTGCGGTGATGGTCAAGCGATGCAAACTCAGCTAAAGCCGCTTAAGAGCGTGAATGCTGACTATCACAGTGCTTACGTGG
CGGCAAAACTGAAAGGTTCTCGCGGTGAGGTTTACGCCAGTATCTATGTCGTCAATCGCGAGGATAGATATACCTATCTG
CAGGTCGATATCCTCGATGCTATTCCTGAGCCGCTGGATTTGATCCAAGCCAATAGTGACTTTTTACAGCAGGCGCCGAA
GCAAATTGAGATTAAAGATAGGCGTAGTGACGATGCTCAAGGCGCGACCGATCATCCTTTATTGGGGCGCATGCCCGGCA
GTTATATTACCAGTTACAAACAAACTAACTTTATCCAAGTGCCTGTATTGGTGGGGATCTCGGGCGCCGATTATCAAACC
AAATCGCTGGATGCCAAGCTTACCCAAATAAGTTATCAGATGCCTGAAAGCTATTCGTTGTTTGAAATCAACAGCAATTA
TGCCGCAGCAGCACAAAAACTGCAGGCTGAGCGGGTGTTCCACTGTAAAGGCACGGCCTGCGGCGACGATGATAACCTGA
TCAATGCCATCAAATTAATCAAGGACGATAAAGAGGACGAATGGCAGGAGTATCAGCTGTTTAAGCTGAGCCACGCCAAG
GGAGATGTTTACTTCGATATCTATTCCCAAGGATATTTCGATGGCACACCTGCCGATACTACGCTTAGGGTAATGGAGCT
TTCTACTCTGAAGGATGATCGTGTGGCGATTAACCTCGATGCCCTGACCGATGCGATTAGCCAAACAGGCAAGGCAACAT
TAGAGGGATTGCTATTTGATTATGACAGTGAGCGTATGTTACCTGAGTCCAAGCCAGTACTCGAGGTCCTCGCAAGTTAT
CTTAAGCAGAATCCGACGCTGAGTTTTTATGTAGTCGGACATACTGATGACAAGGGCGAGCGGAGTTACAATCAAAGCCT
GTCGGAGCGCCGCGCCGCAGCAGTGATTAAGCAGTTGAGTGACGGGTTTAAAATTCCGTCGGCCCAATTAACCGCCCACG
GAAACGGGGAGTACAGCCCTGTGGCCAGTAACACTAATGACGCTGGACAAAAGTTGAATCGCAGAGTGGAGTTAGTGCTT
CGTTCCGATAAAAAGTAG

Upstream 100 bases:

>100_bases
TAATACCTAGGTAAAAAATTTTATCGTATTATCCCGTCACTTTTTTATCTATTTAATTGCTTCGCGAGAGCGAGATTCCC
CCCACAGAAAAGGATTTTTT

Downstream 100 bases:

>100_bases
CTCAACGCATCAGCTTGAAAGGCTATCTTCGTTCCATCTAAAACGCCTGAGATGACTCAGGCGTTTTTATCTTCATTGGT
GTTCATTGGAAGATATTGTT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 484

Protein sequence:

>485_residues
MGHKTLLSAVLLTATYGVATFAVNAESLFTPFPDAKSPEEKRIHFTPFELITAVNGDKFTLLPVSGKLTRQSVELPAGYS
PEHVINNYLAQLKKLNAEVLFSCQAASCGDGQAMQTQLKPLKSVNADYHSAYVAAKLKGSRGEVYASIYVVNREDRYTYL
QVDILDAIPEPLDLIQANSDFLQQAPKQIEIKDRRSDDAQGATDHPLLGRMPGSYITSYKQTNFIQVPVLVGISGADYQT
KSLDAKLTQISYQMPESYSLFEINSNYAAAAQKLQAERVFHCKGTACGDDDNLINAIKLIKDDKEDEWQEYQLFKLSHAK
GDVYFDIYSQGYFDGTPADTTLRVMELSTLKDDRVAINLDALTDAISQTGKATLEGLLFDYDSERMLPESKPVLEVLASY
LKQNPTLSFYVVGHTDDKGERSYNQSLSERRAAAVIKQLSDGFKIPSAQLTAHGNGEYSPVASNTNDAGQKLNRRVELVL
RSDKK

Sequences:

>Translated_485_residues
MGHKTLLSAVLLTATYGVATFAVNAESLFTPFPDAKSPEEKRIHFTPFELITAVNGDKFTLLPVSGKLTRQSVELPAGYS
PEHVINNYLAQLKKLNAEVLFSCQAASCGDGQAMQTQLKPLKSVNADYHSAYVAAKLKGSRGEVYASIYVVNREDRYTYL
QVDILDAIPEPLDLIQANSDFLQQAPKQIEIKDRRSDDAQGATDHPLLGRMPGSYITSYKQTNFIQVPVLVGISGADYQT
KSLDAKLTQISYQMPESYSLFEINSNYAAAAQKLQAERVFHCKGTACGDDDNLINAIKLIKDDKEDEWQEYQLFKLSHAK
GDVYFDIYSQGYFDGTPADTTLRVMELSTLKDDRVAINLDALTDAISQTGKATLEGLLFDYDSERMLPESKPVLEVLASY
LKQNPTLSFYVVGHTDDKGERSYNQSLSERRAAAVIKQLSDGFKIPSAQLTAHGNGEYSPVASNTNDAGQKLNRRVELVL
RSDKK
>Mature_484_residues
GHKTLLSAVLLTATYGVATFAVNAESLFTPFPDAKSPEEKRIHFTPFELITAVNGDKFTLLPVSGKLTRQSVELPAGYSP
EHVINNYLAQLKKLNAEVLFSCQAASCGDGQAMQTQLKPLKSVNADYHSAYVAAKLKGSRGEVYASIYVVNREDRYTYLQ
VDILDAIPEPLDLIQANSDFLQQAPKQIEIKDRRSDDAQGATDHPLLGRMPGSYITSYKQTNFIQVPVLVGISGADYQTK
SLDAKLTQISYQMPESYSLFEINSNYAAAAQKLQAERVFHCKGTACGDDDNLINAIKLIKDDKEDEWQEYQLFKLSHAKG
DVYFDIYSQGYFDGTPADTTLRVMELSTLKDDRVAINLDALTDAISQTGKATLEGLLFDYDSERMLPESKPVLEVLASYL
KQNPTLSFYVVGHTDDKGERSYNQSLSERRAAAVIKQLSDGFKIPSAQLTAHGNGEYSPVASNTNDAGQKLNRRVELVLR
SDKK

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788957, Length=108, Percent_Identity=36.1111111111111, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 53706; Mature: 53575

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHKTLLSAVLLTATYGVATFAVNAESLFTPFPDAKSPEEKRIHFTPFELITAVNGDKFT
CCHHHHHHHHHHHHHHCCEEEEECHHHHCCCCCCCCCCCCCEEEECHHHHHEECCCCEEE
LLPVSGKLTRQSVELPAGYSPEHVINNYLAQLKKLNAEVLFSCQAASCGDGQAMQTQLKP
EEECCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHH
LKSVNADYHSAYVAAKLKGSRGEVYASIYVVNREDRYTYLQVDILDAIPEPLDLIQANSD
HHHCCCCHHHEEEEEEECCCCCCEEEEEEEEECCCCEEEEEEEEHHHCCCCHHHHCCCCH
FLQQAPKQIEIKDRRSDDAQGATDHPLLGRMPGSYITSYKQTNFIQVPVLVGISGADYQT
HHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEECCCCCCC
KSLDAKLTQISYQMPESYSLFEINSNYAAAAQKLQAERVFHCKGTACGDDDNLINAIKLI
HHHCHHHHEEEEECCCCEEEEEECCCHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHH
KDDKEDEWQEYQLFKLSHAKGDVYFDIYSQGYFDGTPADTTLRVMELSTLKDDRVAINLD
HCCCCCHHHHEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEEEEHH
ALTDAISQTGKATLEGLLFDYDSERMLPESKPVLEVLASYLKQNPTLSFYVVGHTDDKGE
HHHHHHHHCCHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCH
RSYNQSLSERRAAAVIKQLSDGFKIPSAQLTAHGNGEYSPVASNTNDAGQKLNRRVELVL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHEEEEE
RSDKK
ECCCC
>Mature Secondary Structure 
GHKTLLSAVLLTATYGVATFAVNAESLFTPFPDAKSPEEKRIHFTPFELITAVNGDKFT
CHHHHHHHHHHHHHHCCEEEEECHHHHCCCCCCCCCCCCCEEEECHHHHHEECCCCEEE
LLPVSGKLTRQSVELPAGYSPEHVINNYLAQLKKLNAEVLFSCQAASCGDGQAMQTQLKP
EEECCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHH
LKSVNADYHSAYVAAKLKGSRGEVYASIYVVNREDRYTYLQVDILDAIPEPLDLIQANSD
HHHCCCCHHHEEEEEEECCCCCCEEEEEEEEECCCCEEEEEEEEHHHCCCCHHHHCCCCH
FLQQAPKQIEIKDRRSDDAQGATDHPLLGRMPGSYITSYKQTNFIQVPVLVGISGADYQT
HHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEECCCCCCC
KSLDAKLTQISYQMPESYSLFEINSNYAAAAQKLQAERVFHCKGTACGDDDNLINAIKLI
HHHCHHHHEEEEECCCCEEEEEECCCHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHH
KDDKEDEWQEYQLFKLSHAKGDVYFDIYSQGYFDGTPADTTLRVMELSTLKDDRVAINLD
HCCCCCHHHHEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEEEEHH
ALTDAISQTGKATLEGLLFDYDSERMLPESKPVLEVLASYLKQNPTLSFYVVGHTDDKGE
HHHHHHHHCCHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCH
RSYNQSLSERRAAAVIKQLSDGFKIPSAQLTAHGNGEYSPVASNTNDAGQKLNRRVELVL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHEEEEE
RSDKK
ECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]