| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is 113969212
Identifier: 113969212
GI number: 113969212
Start: 1021808
End: 1022218
Strand: Direct
Name: 113969212
Synonym: Shewmr4_0868
Alternate gene names: NA
Gene position: 1021808-1022218 (Clockwise)
Preceding gene: 113969211
Following gene: 113969213
Centisome position: 21.71
GC content: 47.2
Gene sequence:
>411_bases GTGAGATCGTTAAAAAAGCGGTTGTTCGTCTGCATCTTGTGTCCCTTGCTGTTTGTCAGTGCCCCTTGTGTGTTGGCCGA TGATGACATTGAAATCAGTGGATTAGTCATAGACAGAACCTTAACCCGTTTTGGTAAGGATTTTGGCTTTTACTATTCAA GTTATTGGCGCGAATTGCCCTTTACCCAAGGTTTTAACGTGACCCTGTATGAGACTGTGTTTCCACAGGCGGGCACGGTT TTAACCTTAGAGGTCAACGGTACGCGCATCTACACCACGCACTTTGGCCGCCGCGCCAATCCGATTAAGGAAAGCGCAGA GCAGGCCATATTGCTGACCATTGATTACTTAGCTCAGGTTCGAGCCAATGCTATTACGGGTGATTTTTCAGGAACAACGG ACGACTTTTAG
Upstream 100 bases:
>100_bases CCTGTTACCCTGCGTAAGCGAAAATGTTGACTAAGGGCTTGTCCTTGGTTCGGCTTTGGATATCGCGCAATGGGTGGCTT TCATCGACAGGGAGAGGAAA
Downstream 100 bases:
>100_bases GATAATTATAATGACTTACAGGACGTTACTTTCTCTTGCCGTGCTCTGCATGGCATGCACAAGCCAAGCAACCGAATTAA TCTATACCCCTGTGAATCCC
Product: curli production assembly/transport component CsgE
Products: NA
Alternate protein names: Curli Production Assembly/Transport Component
Number of amino acids: Translated: 136; Mature: 136
Protein sequence:
>136_residues MRSLKKRLFVCILCPLLFVSAPCVLADDDIEISGLVIDRTLTRFGKDFGFYYSSYWRELPFTQGFNVTLYETVFPQAGTV LTLEVNGTRIYTTHFGRRANPIKESAEQAILLTIDYLAQVRANAITGDFSGTTDDF
Sequences:
>Translated_136_residues MRSLKKRLFVCILCPLLFVSAPCVLADDDIEISGLVIDRTLTRFGKDFGFYYSSYWRELPFTQGFNVTLYETVFPQAGTV LTLEVNGTRIYTTHFGRRANPIKESAEQAILLTIDYLAQVRANAITGDFSGTTDDF >Mature_136_residues MRSLKKRLFVCILCPLLFVSAPCVLADDDIEISGLVIDRTLTRFGKDFGFYYSSYWRELPFTQGFNVTLYETVFPQAGTV LTLEVNGTRIYTTHFGRRANPIKESAEQAILLTIDYLAQVRANAITGDFSGTTDDF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15350; Mature: 15350
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSLKKRLFVCILCPLLFVSAPCVLADDDIEISGLVIDRTLTRFGKDFGFYYSSYWRELP CCCHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC FTQGFNVTLYETVFPQAGTVLTLEVNGTRIYTTHFGRRANPIKESAEQAILLTIDYLAQV CCCCCCEEEEEEECCCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHEEEEEHHHHHHH RANAITGDFSGTTDDF HHHCCCCCCCCCCCCC >Mature Secondary Structure MRSLKKRLFVCILCPLLFVSAPCVLADDDIEISGLVIDRTLTRFGKDFGFYYSSYWRELP CCCHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC FTQGFNVTLYETVFPQAGTVLTLEVNGTRIYTTHFGRRANPIKESAEQAILLTIDYLAQV CCCCCCEEEEEEECCCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHEEEEEHHHHHHH RANAITGDFSGTTDDF HHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA