| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is 113969199
Identifier: 113969199
GI number: 113969199
Start: 1007818
End: 1008354
Strand: Direct
Name: 113969199
Synonym: Shewmr4_0855
Alternate gene names: NA
Gene position: 1007818-1008354 (Clockwise)
Preceding gene: 113969198
Following gene: 113969200
Centisome position: 21.41
GC content: 46.93
Gene sequence:
>537_bases ATGCACAAACTCATTTTATTACCTAAGGTCACTCAGACAGGATTCACCCTAATTGAGTTGATGATCAGCCTTACACTCGG TCTTGTCGTCATGCTGGGCGCATCACAGATTTTTGTTAGCGTTAATAAGGCTTATGTCGAAACCCAGCGTTTTTCTCAGC TACAGGGGGACTTATCTCTCATCAGTGACATGCTGGCATCTGACGTGCGCGCGGCCTCAAGCGTTATCGTGGCCAGCGAC GCTAACGGCAACAGTATACTGACATTGGTATTAGCGACGGGCAATGTTGTCTACAACCTAGCTAGTGGTAGTTTAAATCG CACCCAAGCTGGTGTGACTGAAACAATGACGGAGCAAGGTTCGAGCTTTACGAGTCAGTGTATTGCTAAGGACCTAAGCA CTTCGTGTGATAGCCCTATCATGCTTAAGCTCGCGGTTGGACTTAATTCCAGTGATGGCACAACTACCCGAGTTCACTTA GTCGAATTCAATGTCGCGATACGCAATAACGTGTTGGCGGTAAAGTTTTCGAGTTAA
Upstream 100 bases:
>100_bases TTATTACTGTGGACTGGGGAGAGTCACGCTTTGGGGAAAACGATGTCCCGTCTCAGTTTATTTACTCCGTCGATCTCTAT CCCGGCAGTTGAGGCCTGTA
Downstream 100 bases:
>100_bases TAGACGGTTTTTGAAGAGTTGATGAATATCTTCACTCTCTAAATAAGCGCATAAGAAGGGAATAACATGCAAGGTAAGCA CAAGGGAGCTGTTTTAGCCA
Product: prepilin-type cleavage/methylation-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 178; Mature: 178
Protein sequence:
>178_residues MHKLILLPKVTQTGFTLIELMISLTLGLVVMLGASQIFVSVNKAYVETQRFSQLQGDLSLISDMLASDVRAASSVIVASD ANGNSILTLVLATGNVVYNLASGSLNRTQAGVTETMTEQGSSFTSQCIAKDLSTSCDSPIMLKLAVGLNSSDGTTTRVHL VEFNVAIRNNVLAVKFSS
Sequences:
>Translated_178_residues MHKLILLPKVTQTGFTLIELMISLTLGLVVMLGASQIFVSVNKAYVETQRFSQLQGDLSLISDMLASDVRAASSVIVASD ANGNSILTLVLATGNVVYNLASGSLNRTQAGVTETMTEQGSSFTSQCIAKDLSTSCDSPIMLKLAVGLNSSDGTTTRVHL VEFNVAIRNNVLAVKFSS >Mature_178_residues MHKLILLPKVTQTGFTLIELMISLTLGLVVMLGASQIFVSVNKAYVETQRFSQLQGDLSLISDMLASDVRAASSVIVASD ANGNSILTLVLATGNVVYNLASGSLNRTQAGVTETMTEQGSSFTSQCIAKDLSTSCDSPIMLKLAVGLNSSDGTTTRVHL VEFNVAIRNNVLAVKFSS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18831; Mature: 18831
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHKLILLPKVTQTGFTLIELMISLTLGLVVMLGASQIFVSVNKAYVETQRFSQLQGDLSL CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCHHH ISDMLASDVRAASSVIVASDANGNSILTLVLATGNVVYNLASGSLNRTQAGVTETMTEQG HHHHHHHHHHHHCEEEEEECCCCCEEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHCC SSFTSQCIAKDLSTSCDSPIMLKLAVGLNSSDGTTTRVHLVEFNVAIRNNVLAVKFSS CHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEEEECCCEEEEEECC >Mature Secondary Structure MHKLILLPKVTQTGFTLIELMISLTLGLVVMLGASQIFVSVNKAYVETQRFSQLQGDLSL CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCHHH ISDMLASDVRAASSVIVASDANGNSILTLVLATGNVVYNLASGSLNRTQAGVTETMTEQG HHHHHHHHHHHHCEEEEEECCCCCEEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHCC SSFTSQCIAKDLSTSCDSPIMLKLAVGLNSSDGTTTRVHLVEFNVAIRNNVLAVKFSS CHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEEEECCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA