Click here to switch to the map view.

The map label for this gene is glpD [H]

Identifier: 113969160

GI number: 113969160

Start: 950164

End: 951354

Strand: Direct

Name: glpD [H]

Synonym: Shewmr4_0816

Alternate gene names: 113969160

Gene position: 950164-951354 (Clockwise)

Preceding gene: 113969159

Following gene: 113969161

Centisome position: 20.19

GC content: 49.45

Gene sequence:

>1191_bases
ATGGATAAAGTCGGTATGAGTTCATACGATATTGCGATTATCGGTGGTGGGATCAGCGGTGTCGGTATCGCCCAATACGC
GGCAGCGGCGGGGTATTCGACCCTGCTTATCGAAAAAGGCGAGATAGGCGGCCAAACCTCAGCCAATTCCAGCAAGTTGA
TCCACGGTGGTTTGCGCTATCTTGAAAGCGGACAAGTGAACCTAGTGCGTAAATCCTTGCAGGAGCGGCGCCATCTGCTC
GACTTCGCGCCCAGCTTAGTCAAGCCCGTGCCTTTTTATATTCCCGTTTATCAAGACAATCAGCGTAACCCCTGGATGAT
TCGAGCGGGCTTGAGTCTGTACGCGCTGTTAAGTGAATTTGATCCGCTTGGTCGTTTCGTGTCGATACCCGCTGTGCATT
GGCATCGTTTTAATGGACTTAAACTCCAAGGTTTAAAGGCGGTATTTCAATATTGGGATGCACAAACCGACGATAAACTG
CTTACCCAGTCGGTGGCGCGAAGTGCCGAGGCATTGGGTGCCCATGTGTATGCCGAGGCGGAGTTTTTACAGCTCAATCA
TCTGAATGAGCAGATTGAGCTGAGTTTTCGCCATCGCGGCGAAGTGCAACAGATTGAGGCTAAATTGGTGATAAATGCCG
CCGGCCCTTGGGTCAATGAGGTGATTGCTAAGGTGACACCACCACTGGCTGGGGCAAAAATTGATTGGGTACAGGGCGCA
CATCTGCTGCTGGATTTACCGGCCCCCGACGGCATCTTATATTTAGAATCTTGCTTCGATAAGCGGGTGATTTTTGTGAT
GCCTTGGTATGGTCAACTGCTAATTGGCACCACAGAAACTGAGCTGACCTCTCTAGATATGCTACCCCAAGTGACTGAGT
CTGAAATAAATTACCTTTTAGGTATTTATCGGCACTACTTTCCTATGTCACCTTCGATTGATGAACTCAAAACCAAGATA
GTGCAGACGTTTTGTGGCGTGAGGGTATTACCTAAACAGGCGAGCTCCGCCTTTGAGCGCCCAAGGGAGACCCTAATGCA
AACCTCGATTTCTCACCCGAGATTACTGAGTCTCTACGGCGGAAAACTCACGACCTTTAGGAGCACCTCGGCTGAAGTGC
TTGAGTGGATTGAACAAAAACTCGGAAAACGTACACCCATCGCCGATGTAGATAGCCTGAGATTAAGTTAA

Upstream 100 bases:

>100_bases
AAGCCTTAAAGCAATTGCACGCCAGTATCGAATAGGGTGAAAGCCAATCTGTGATAGCAAGGGAGTGGAACATGGATAAA
CACACCATCAAGGCGCTAGG

Downstream 100 bases:

>100_bases
TCTGGGCCGGATAATCGGTCAAGGCTGCACTTCGAGGTGATTTTTCGGCATAAAAACGCTAAAGTGTGGCGCTTTTTGAC
TGAGGCCTTAATCCTGTTTG

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MDKVGMSSYDIAIIGGGISGVGIAQYAAAAGYSTLLIEKGEIGGQTSANSSKLIHGGLRYLESGQVNLVRKSLQERRHLL
DFAPSLVKPVPFYIPVYQDNQRNPWMIRAGLSLYALLSEFDPLGRFVSIPAVHWHRFNGLKLQGLKAVFQYWDAQTDDKL
LTQSVARSAEALGAHVYAEAEFLQLNHLNEQIELSFRHRGEVQQIEAKLVINAAGPWVNEVIAKVTPPLAGAKIDWVQGA
HLLLDLPAPDGILYLESCFDKRVIFVMPWYGQLLIGTTETELTSLDMLPQVTESEINYLLGIYRHYFPMSPSIDELKTKI
VQTFCGVRVLPKQASSAFERPRETLMQTSISHPRLLSLYGGKLTTFRSTSAEVLEWIEQKLGKRTPIADVDSLRLS

Sequences:

>Translated_396_residues
MDKVGMSSYDIAIIGGGISGVGIAQYAAAAGYSTLLIEKGEIGGQTSANSSKLIHGGLRYLESGQVNLVRKSLQERRHLL
DFAPSLVKPVPFYIPVYQDNQRNPWMIRAGLSLYALLSEFDPLGRFVSIPAVHWHRFNGLKLQGLKAVFQYWDAQTDDKL
LTQSVARSAEALGAHVYAEAEFLQLNHLNEQIELSFRHRGEVQQIEAKLVINAAGPWVNEVIAKVTPPLAGAKIDWVQGA
HLLLDLPAPDGILYLESCFDKRVIFVMPWYGQLLIGTTETELTSLDMLPQVTESEINYLLGIYRHYFPMSPSIDELKTKI
VQTFCGVRVLPKQASSAFERPRETLMQTSISHPRLLSLYGGKLTTFRSTSAEVLEWIEQKLGKRTPIADVDSLRLS
>Mature_396_residues
MDKVGMSSYDIAIIGGGISGVGIAQYAAAAGYSTLLIEKGEIGGQTSANSSKLIHGGLRYLESGQVNLVRKSLQERRHLL
DFAPSLVKPVPFYIPVYQDNQRNPWMIRAGLSLYALLSEFDPLGRFVSIPAVHWHRFNGLKLQGLKAVFQYWDAQTDDKL
LTQSVARSAEALGAHVYAEAEFLQLNHLNEQIELSFRHRGEVQQIEAKLVINAAGPWVNEVIAKVTPPLAGAKIDWVQGA
HLLLDLPAPDGILYLESCFDKRVIFVMPWYGQLLIGTTETELTSLDMLPQVTESEINYLLGIYRHYFPMSPSIDELKTKI
VQTFCGVRVLPKQASSAFERPRETLMQTSISHPRLLSLYGGKLTTFRSTSAEVLEWIEQKLGKRTPIADVDSLRLS

Specific function: Conversion Of Glycerol 3-Phosphate To Dihydroxyacetone. Uses Molecular Oxygen Or Nitrate As Electron Acceptor. [C]

COG id: COG0578

COG function: function code C; Glycerol-3-phosphate dehydrogenase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI285002233, Length=390, Percent_Identity=29.7435897435897, Blast_Score=150, Evalue=3e-36,
Organism=Homo sapiens, GI285002231, Length=390, Percent_Identity=29.7435897435897, Blast_Score=150, Evalue=3e-36,
Organism=Escherichia coli, GI2367226, Length=351, Percent_Identity=33.048433048433, Blast_Score=157, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17509253, Length=395, Percent_Identity=28.1012658227848, Blast_Score=122, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI115534726, Length=371, Percent_Identity=28.8409703504043, Blast_Score=117, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6322036, Length=406, Percent_Identity=28.0788177339901, Blast_Score=122, Evalue=1e-28,
Organism=Drosophila melanogaster, GI161077125, Length=390, Percent_Identity=28.7179487179487, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24653942, Length=390, Percent_Identity=28.7179487179487, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24653944, Length=390, Percent_Identity=28.7179487179487, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI20130025, Length=390, Percent_Identity=28.7179487179487, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24586295, Length=383, Percent_Identity=29.5039164490862, Blast_Score=114, Evalue=8e-26,
Organism=Drosophila melanogaster, GI19921278, Length=386, Percent_Identity=22.5388601036269, Blast_Score=75, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR000447 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.1.5.3 [H]

Molecular weight: Translated: 44109; Mature: 44109

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKVGMSSYDIAIIGGGISGVGIAQYAAAAGYSTLLIEKGEIGGQTSANSSKLIHGGLRY
CCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
LESGQVNLVRKSLQERRHLLDFAPSLVKPVPFYIPVYQDNQRNPWMIRAGLSLYALLSEF
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCHHHHHHHHHC
DPLGRFVSIPAVHWHRFNGLKLQGLKAVFQYWDAQTDDKLLTQSVARSAEALGAHVYAEA
CCCCCEEECCCCEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEHH
EFLQLNHLNEQIELSFRHRGEVQQIEAKLVINAAGPWVNEVIAKVTPPLAGAKIDWVQGA
HHHHHHCCCCEEEEEECCCCCHHEEEEEEEEECCCCHHHHHHHHHCCCCCCCEEEEECCC
HLLLDLPAPDGILYLESCFDKRVIFVMPWYGQLLIGTTETELTSLDMLPQVTESEINYLL
EEEEECCCCCCEEEEEHHHCCCEEEEECCCCEEEEECCHHHHHHHHHCCCHHHHHHHHHH
GIYRHYFPMSPSIDELKTKIVQTFCGVRVLPKQASSAFERPRETLMQTSISHPRLLSLYG
HHHHHHCCCCCCHHHHHHHHHHHHHCCEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECC
GKLTTFRSTSAEVLEWIEQKLGKRTPIADVDSLRLS
CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDKVGMSSYDIAIIGGGISGVGIAQYAAAAGYSTLLIEKGEIGGQTSANSSKLIHGGLRY
CCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
LESGQVNLVRKSLQERRHLLDFAPSLVKPVPFYIPVYQDNQRNPWMIRAGLSLYALLSEF
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCHHHHHHHHHC
DPLGRFVSIPAVHWHRFNGLKLQGLKAVFQYWDAQTDDKLLTQSVARSAEALGAHVYAEA
CCCCCEEECCCCEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEHH
EFLQLNHLNEQIELSFRHRGEVQQIEAKLVINAAGPWVNEVIAKVTPPLAGAKIDWVQGA
HHHHHHCCCCEEEEEECCCCCHHEEEEEEEEECCCCHHHHHHHHHCCCCCCCEEEEECCC
HLLLDLPAPDGILYLESCFDKRVIFVMPWYGQLLIGTTETELTSLDMLPQVTESEINYLL
EEEEECCCCCCEEEEEHHHCCCEEEEECCCCEEEEECCHHHHHHHHHCCCHHHHHHHHHH
GIYRHYFPMSPSIDELKTKIVQTFCGVRVLPKQASSAFERPRETLMQTSISHPRLLSLYG
HHHHHHCCCCCCHHHHHHHHHHHHHCCEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECC
GKLTTFRSTSAEVLEWIEQKLGKRTPIADVDSLRLS
CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]