| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is 113969129
Identifier: 113969129
GI number: 113969129
Start: 911738
End: 913138
Strand: Direct
Name: 113969129
Synonym: Shewmr4_0785
Alternate gene names: NA
Gene position: 911738-913138 (Clockwise)
Preceding gene: 113969128
Following gene: 113969135
Centisome position: 19.37
GC content: 48.82
Gene sequence:
>1401_bases GTGTTTAAGATACGTGTCAAACAAGAAGAATCCCTGTCGATTAAGTTCAGCCATCAGATGGAAAAGGGCGATAATCGTCA GCTCGATCTCTATTTCTTTTTACCAAAGGAAATGGGCATAGGCGCGCACACCTTAAATGAGGAGGAGTACTACCACAGCT CTATTGTCGGTCGTCGATCTTATTACTCCGAAGGGTTGCACTTGCCACTGGTGCAAGGACGTTTTGCCAGTATGAACCGT CGCACGGTGGAAGAATTCCGGCTGTACTTAAACCTGTTTGCCTACCAGTTTGCCGTCGCGGTTGAAAACGATGTCAAAGA ACTCAATCGCATCGCCGATGTGGAACACTTCTATCTGGCGCTCGATGAGCTGTGCGAGCAAGTGACGCAACTGCTGAAAA AGTTTCGTCGCAATGAGCCGGGCGATCCTAAATGGAAATCCTATTTCGAGAATGCCGATAACTATCTCTCCTGGTTCTGC GAGCAGCAACTGTTAAAAGTGCTCGCCCATGCCACGCGCACCAGTGATTTTGCCGACATCCAAGAACGGGTGCTGACCCT ATGCCGCAACGAATGCGCTTACCGCGACGCCAACAACTACAACTCTGCGCAGACCAAGCAAGATCCTAACCGAATCTCTA ATAAGATGCTGTTATTACGGCGCTTAATTCAGCAAGGTGTGGTACTCAAAGAAGAGTTAAAACCCTTAGGCATTGGCCTT AAAAAGTTTACGACTGGACTTGCGACCGCGTTGGTTATGTTGGTGGTATCGGCGCTTATCATCGAGGCGCAGGGCGTCTT TAGCGGCTTTACCATCGCATTGGTGCTGACGTTGGCGGTCATTTACGGATTTCGTGAAATCTTTAAGGACGATGTGCGTA ATGCTCTCTGGCGCTTTATTCAGCGTGGTCGGCCGCGTTGGAGCCGTATCTTAAGGGATACCACCAGTCAGTCGGTGATC GCTAAACAATTAGTTTGGCTCGAATTTATGCGGCAACAGGATTTGCCTGAAAAGGTTAACGAAATTCTAAAACAACGGCA TAGCCAAAATAAGGTCGATGCCGAAGTCCTGCATTATAAGATTGCTACTCGGGTAAACCATGGCGAGTTTCAGGCGGGAT ATTCGACGATACAAGAGCAAGTGAACTTTAGTTTTGTGCCTTTTGCCCGCTACTTAGAGCGGGGCAAGGCCAAGATTTAT AAGGAACTTGAGGGCAAGATCAGTCACGAGTCGGTCGAACGTCGTTATCAAGTGAATCTGATTTTAGTGCTGCGTGATGG CCGTGAAGAGCCGGAATACGCCCGCTATAAAATCACCATGAACCGCTCGGCCATTATCGAGATCACCCAAAGTAAGCTGC CCGATTCCTTTAACCCGCCCGCTAAGGCTGGTGGCGAGTAA
Upstream 100 bases:
>100_bases CAATAGCCGAATTTAATCAGTGAATTTGCCGCGCTTTCGGTTTAGATTATATTTTCCATGGTGTTAATGCCGACTCTTCC ATCTCAATCATAAGGTTGTT
Downstream 100 bases:
>100_bases AGGCCTGGCCGATATTCTGATCGTTATTCTGCTTCGCCCGTTTGAGCGCCAGCTCGGCATTGCTGAGGTATTGCTCTAGG CTTTGTCCTTCCTGATAACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 466; Mature: 466
Protein sequence:
>466_residues MFKIRVKQEESLSIKFSHQMEKGDNRQLDLYFFLPKEMGIGAHTLNEEEYYHSSIVGRRSYYSEGLHLPLVQGRFASMNR RTVEEFRLYLNLFAYQFAVAVENDVKELNRIADVEHFYLALDELCEQVTQLLKKFRRNEPGDPKWKSYFENADNYLSWFC EQQLLKVLAHATRTSDFADIQERVLTLCRNECAYRDANNYNSAQTKQDPNRISNKMLLLRRLIQQGVVLKEELKPLGIGL KKFTTGLATALVMLVVSALIIEAQGVFSGFTIALVLTLAVIYGFREIFKDDVRNALWRFIQRGRPRWSRILRDTTSQSVI AKQLVWLEFMRQQDLPEKVNEILKQRHSQNKVDAEVLHYKIATRVNHGEFQAGYSTIQEQVNFSFVPFARYLERGKAKIY KELEGKISHESVERRYQVNLILVLRDGREEPEYARYKITMNRSAIIEITQSKLPDSFNPPAKAGGE
Sequences:
>Translated_466_residues MFKIRVKQEESLSIKFSHQMEKGDNRQLDLYFFLPKEMGIGAHTLNEEEYYHSSIVGRRSYYSEGLHLPLVQGRFASMNR RTVEEFRLYLNLFAYQFAVAVENDVKELNRIADVEHFYLALDELCEQVTQLLKKFRRNEPGDPKWKSYFENADNYLSWFC EQQLLKVLAHATRTSDFADIQERVLTLCRNECAYRDANNYNSAQTKQDPNRISNKMLLLRRLIQQGVVLKEELKPLGIGL KKFTTGLATALVMLVVSALIIEAQGVFSGFTIALVLTLAVIYGFREIFKDDVRNALWRFIQRGRPRWSRILRDTTSQSVI AKQLVWLEFMRQQDLPEKVNEILKQRHSQNKVDAEVLHYKIATRVNHGEFQAGYSTIQEQVNFSFVPFARYLERGKAKIY KELEGKISHESVERRYQVNLILVLRDGREEPEYARYKITMNRSAIIEITQSKLPDSFNPPAKAGGE >Mature_466_residues MFKIRVKQEESLSIKFSHQMEKGDNRQLDLYFFLPKEMGIGAHTLNEEEYYHSSIVGRRSYYSEGLHLPLVQGRFASMNR RTVEEFRLYLNLFAYQFAVAVENDVKELNRIADVEHFYLALDELCEQVTQLLKKFRRNEPGDPKWKSYFENADNYLSWFC EQQLLKVLAHATRTSDFADIQERVLTLCRNECAYRDANNYNSAQTKQDPNRISNKMLLLRRLIQQGVVLKEELKPLGIGL KKFTTGLATALVMLVVSALIIEAQGVFSGFTIALVLTLAVIYGFREIFKDDVRNALWRFIQRGRPRWSRILRDTTSQSVI AKQLVWLEFMRQQDLPEKVNEILKQRHSQNKVDAEVLHYKIATRVNHGEFQAGYSTIQEQVNFSFVPFARYLERGKAKIY KELEGKISHESVERRYQVNLILVLRDGREEPEYARYKITMNRSAIIEITQSKLPDSFNPPAKAGGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54375; Mature: 54375
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKIRVKQEESLSIKFSHQMEKGDNRQLDLYFFLPKEMGIGAHTLNEEEYYHSSIVGRRS CEEEEECCCCCCEEEEEHHHCCCCCCEEEEEEEECHHCCCCCCCCCHHHHHHHHHHHHHH YYSEGLHLPLVQGRFASMNRRTVEEFRLYLNLFAYQFAVAVENDVKELNRIADVEHFYLA HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDELCEQVTQLLKKFRRNEPGDPKWKSYFENADNYLSWFCEQQLLKVLAHATRTSDFADI HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH QERVLTLCRNECAYRDANNYNSAQTKQDPNRISNKMLLLRRLIQQGVVLKEELKPLGIGL HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH KKFTTGLATALVMLVVSALIIEAQGVFSGFTIALVLTLAVIYGFREIFKDDVRNALWRFI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRGRPRWSRILRDTTSQSVIAKQLVWLEFMRQQDLPEKVNEILKQRHSQNKVDAEVLHYK HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHH IATRVNHGEFQAGYSTIQEQVNFSFVPFARYLERGKAKIYKELEGKISHESVERRYQVNL HHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEE ILVLRDGREEPEYARYKITMNRSAIIEITQSKLPDSFNPPAKAGGE EEEEECCCCCCCCEEEEEEECCHHHEEEHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MFKIRVKQEESLSIKFSHQMEKGDNRQLDLYFFLPKEMGIGAHTLNEEEYYHSSIVGRRS CEEEEECCCCCCEEEEEHHHCCCCCCEEEEEEEECHHCCCCCCCCCHHHHHHHHHHHHHH YYSEGLHLPLVQGRFASMNRRTVEEFRLYLNLFAYQFAVAVENDVKELNRIADVEHFYLA HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDELCEQVTQLLKKFRRNEPGDPKWKSYFENADNYLSWFCEQQLLKVLAHATRTSDFADI HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH QERVLTLCRNECAYRDANNYNSAQTKQDPNRISNKMLLLRRLIQQGVVLKEELKPLGIGL HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH KKFTTGLATALVMLVVSALIIEAQGVFSGFTIALVLTLAVIYGFREIFKDDVRNALWRFI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRGRPRWSRILRDTTSQSVIAKQLVWLEFMRQQDLPEKVNEILKQRHSQNKVDAEVLHYK HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHH IATRVNHGEFQAGYSTIQEQVNFSFVPFARYLERGKAKIYKELEGKISHESVERRYQVNL HHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEE ILVLRDGREEPEYARYKITMNRSAIIEITQSKLPDSFNPPAKAGGE EEEEECCCCCCCCEEEEEEECCHHHEEEHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA