| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
Click here to switch to the map view.
The map label for this gene is 113969128
Identifier: 113969128
GI number: 113969128
Start: 911123
End: 911653
Strand: Direct
Name: 113969128
Synonym: Shewmr4_0784
Alternate gene names: NA
Gene position: 911123-911653 (Clockwise)
Preceding gene: 113969127
Following gene: 113969129
Centisome position: 19.36
GC content: 47.08
Gene sequence:
>531_bases GTGGCTAAGTGGCTCAAGTGGACGATAAATCTGACCATACTCTCGGCGCTTATCGTGGCCTGTGGGGTGATTTATCTGCA ATCTGTCTCCAATAAGGCGGTGATCTTAAATTGCAGCTCCGAGCTTTTTGACCGCCATACTCAGCAAGTGGACGATGGTA AATTTTATCTATTGGTTGATGTACTGATCTCGGCTGGCAATGCACAGATCAATTATCGCTACTTTAACCTCGATGGCTCG AGTGCGGGGGCGATTCTGATGCAGGGCGAGGTCAAGAGCATGGAGCTAAACCGCATGACCTACAATGTATCGGTCAAAAC CAAGACTGAGTCCGAAGACGTCGATAAAAAGTATTGGCCCGAGCACATGAAGTACCTTTCTTACATCAGCAGTTTGCACT TTAGTGAGTCTGGTCGACACAATCTCAGTATTGAAGTGTTAGACAGCGATGCCAACCAAGACTACGCGGTTGTCTTGTTT CAGCCGAGTAACACCGTTTGTGGCTGTAGAATCGTCAATAGCCGAATTTAA
Upstream 100 bases:
>100_bases TACAAACTCGGGCAATCGGTGATCCGTAACTTGAAGATCAGCGACTTTAGACGACCGAAGGAATTTATCGATGCAAACTG GCTGCTGGAGGTCGGGATCT
Downstream 100 bases:
>100_bases TCAGTGAATTTGCCGCGCTTTCGGTTTAGATTATATTTTCCATGGTGTTAATGCCGACTCTTCCATCTCAATCATAAGGT TGTTGTGTTTAAGATACGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
>176_residues MAKWLKWTINLTILSALIVACGVIYLQSVSNKAVILNCSSELFDRHTQQVDDGKFYLLVDVLISAGNAQINYRYFNLDGS SAGAILMQGEVKSMELNRMTYNVSVKTKTESEDVDKKYWPEHMKYLSYISSLHFSESGRHNLSIEVLDSDANQDYAVVLF QPSNTVCGCRIVNSRI
Sequences:
>Translated_176_residues MAKWLKWTINLTILSALIVACGVIYLQSVSNKAVILNCSSELFDRHTQQVDDGKFYLLVDVLISAGNAQINYRYFNLDGS SAGAILMQGEVKSMELNRMTYNVSVKTKTESEDVDKKYWPEHMKYLSYISSLHFSESGRHNLSIEVLDSDANQDYAVVLF QPSNTVCGCRIVNSRI >Mature_175_residues AKWLKWTINLTILSALIVACGVIYLQSVSNKAVILNCSSELFDRHTQQVDDGKFYLLVDVLISAGNAQINYRYFNLDGSS AGAILMQGEVKSMELNRMTYNVSVKTKTESEDVDKKYWPEHMKYLSYISSLHFSESGRHNLSIEVLDSDANQDYAVVLFQ PSNTVCGCRIVNSRI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19859; Mature: 19728
Theoretical pI: Translated: 6.50; Mature: 6.50
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKWLKWTINLTILSALIVACGVIYLQSVSNKAVILNCSSELFDRHTQQVDDGKFYLLVD CCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEEEEEE VLISAGNAQINYRYFNLDGSSAGAILMQGEVKSMELNRMTYNVSVKTKTESEDVDKKYWP EHHCCCCCEEEEEEEEECCCCCCEEEEECCCCEEEEEEEEEEEEEEECCCCCCCCHHHCH EHMKYLSYISSLHFSESGRHNLSIEVLDSDANQDYAVVLFQPSNTVCGCRIVNSRI HHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEEECCCC >Mature Secondary Structure AKWLKWTINLTILSALIVACGVIYLQSVSNKAVILNCSSELFDRHTQQVDDGKFYLLVD CCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEEEEEE VLISAGNAQINYRYFNLDGSSAGAILMQGEVKSMELNRMTYNVSVKTKTESEDVDKKYWP EHHCCCCCEEEEEEEEECCCCCCEEEEECCCCEEEEEEEEEEEEEEECCCCCCCCHHHCH EHMKYLSYISSLHFSESGRHNLSIEVLDSDANQDYAVVLFQPSNTVCGCRIVNSRI HHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA