| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is 113969100
Identifier: 113969100
GI number: 113969100
Start: 878882
End: 880066
Strand: Direct
Name: 113969100
Synonym: Shewmr4_0756
Alternate gene names: NA
Gene position: 878882-880066 (Clockwise)
Preceding gene: 113969099
Following gene: 113969104
Centisome position: 18.67
GC content: 47.68
Gene sequence:
>1185_bases ATGCGTTTGAGTGTTATTGGCTCCCTGCTATCGGGGCTGTTATTACTCCCAAGTGCCAATAGTGTTGGCGAGTCACTTGA AACTGCAATTGTGCCGGAAAGCGCGCAAGGCGGTCAGTCAGTTAAGCTTGAAAGCCAAACTGCATCTTCAGAATCTAAGC TTGGGGAGATTAAGAGCTTAATCCAAGCGGCGATAATGGATTCGCCGCAGCCATTTAGCGGTAGCGTTATTCTACTTGAA GAGGGGAAACCACTGCTTGAATTACAAAAGGGCGAAGGTATCAATCAAGATTCGCGGTTTGTAATGGCATCGCTCTCGAA ACAAATTACCGCAACGCTAGTGTTGCAGGCACTCGATGCGGGGAAACTCGATTTAAATCAAACGCTAAACCATTACCTTT TTGGCGATCTTGAGGCGGAATCTAAGGCGCTAAAAGCCACTGATGCGGGCGCCAATGCGGGGGATTTGAATCCCAACCGT TATGATGAGCGCATTACTTTGCACCAACTGCTGAACCATACATCGGGTGTTGCCAGCATTGGACAGGCCAATCGCTTCGA GCCGGGTAGCCAATTTGAATACTCTAATTTGGGTTATTCACTGCTTGGGCAAGTGCTCGAGAAGGTGAATCACCAATCCT TTACCGAGCAGCTGGCACAATTTGCTGCGCGGTACCAACTCAATGGCTTAAGTGCCGAGCTTGGCAGCCTTGAGGTGATT CATGCCAAAGTGCCAAGTCTGGCAGTGGGATTGCAGGAAAGCGAATTGATTGCGCCTGCTGAGCTGGTGATTGATGAAGC GTTATTGCCCGCAGGGGGATTAATTGCCTCGACGGCTACTTATGCCGCCTTTCAGCAGCAATTACATGCTGGCAAGTTGT TGAGCCCTGAGAGTTATCAGCGGATGACCACTGCGTATATCGAGTTGCCATTTTTGTGGCCGAATATGCGCTATGGTTAT GGGATAAGGATCAATAAGGACAATGACTTGGTCGAATATAGCCATACGGGGTATGTTTCGGGTTATATGTCGATGACGCT GCATTATCCCGAGTTTAATCTGGACTTGGTAATGCTGGAAAATCTCTCCTTAAACCTTAACGACCGTAACCGGGTATTTG AACTGCATAATCAAATACGCCAAATCATTCGTAGTCAGTTGCTTGCTAAAGCTTTTAAGGCTTAA
Upstream 100 bases:
>100_bases TAACTGGCACTCCAAACCTCAAGTCACACTTAAGGTGTGCCTGTGATAAGCTGCCGCTTTCTAATCAGGCTGTATTTGCT AATTAAGTTAAGGATAACCC
Downstream 100 bases:
>100_bases GACTTGCCATTATGTTGGCTAATAGCCATCCAAGTGTGCAGGTGCGAAGGTAGGCTTAACTTCGAAAGCATAAAGCCCCT TTAAATGACGATATAAAAGG
Product: beta-lactamase
Products: NA
Alternate protein names: Secreted Peptidase; Amino Acid Adenylation; Beta-Lactamase Class C-Like Protein; Serine-Type D-Ala-D-Ala Carboxypeptidase; FmtA-Like Protein; Beta-Lactamase Class C Family Protein; Beta-LactamaseCopper Amine Oxidase-Like Protein
Number of amino acids: Translated: 394; Mature: 394
Protein sequence:
>394_residues MRLSVIGSLLSGLLLLPSANSVGESLETAIVPESAQGGQSVKLESQTASSESKLGEIKSLIQAAIMDSPQPFSGSVILLE EGKPLLELQKGEGINQDSRFVMASLSKQITATLVLQALDAGKLDLNQTLNHYLFGDLEAESKALKATDAGANAGDLNPNR YDERITLHQLLNHTSGVASIGQANRFEPGSQFEYSNLGYSLLGQVLEKVNHQSFTEQLAQFAARYQLNGLSAELGSLEVI HAKVPSLAVGLQESELIAPAELVIDEALLPAGGLIASTATYAAFQQQLHAGKLLSPESYQRMTTAYIELPFLWPNMRYGY GIRINKDNDLVEYSHTGYVSGYMSMTLHYPEFNLDLVMLENLSLNLNDRNRVFELHNQIRQIIRSQLLAKAFKA
Sequences:
>Translated_394_residues MRLSVIGSLLSGLLLLPSANSVGESLETAIVPESAQGGQSVKLESQTASSESKLGEIKSLIQAAIMDSPQPFSGSVILLE EGKPLLELQKGEGINQDSRFVMASLSKQITATLVLQALDAGKLDLNQTLNHYLFGDLEAESKALKATDAGANAGDLNPNR YDERITLHQLLNHTSGVASIGQANRFEPGSQFEYSNLGYSLLGQVLEKVNHQSFTEQLAQFAARYQLNGLSAELGSLEVI HAKVPSLAVGLQESELIAPAELVIDEALLPAGGLIASTATYAAFQQQLHAGKLLSPESYQRMTTAYIELPFLWPNMRYGY GIRINKDNDLVEYSHTGYVSGYMSMTLHYPEFNLDLVMLENLSLNLNDRNRVFELHNQIRQIIRSQLLAKAFKA >Mature_394_residues MRLSVIGSLLSGLLLLPSANSVGESLETAIVPESAQGGQSVKLESQTASSESKLGEIKSLIQAAIMDSPQPFSGSVILLE EGKPLLELQKGEGINQDSRFVMASLSKQITATLVLQALDAGKLDLNQTLNHYLFGDLEAESKALKATDAGANAGDLNPNR YDERITLHQLLNHTSGVASIGQANRFEPGSQFEYSNLGYSLLGQVLEKVNHQSFTEQLAQFAARYQLNGLSAELGSLEVI HAKVPSLAVGLQESELIAPAELVIDEALLPAGGLIASTATYAAFQQQLHAGKLLSPESYQRMTTAYIELPFLWPNMRYGY GIRINKDNDLVEYSHTGYVSGYMSMTLHYPEFNLDLVMLENLSLNLNDRNRVFELHNQIRQIIRSQLLAKAFKA
Specific function: Unknown
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42993; Mature: 42993
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLSVIGSLLSGLLLLPSANSVGESLETAIVPESAQGGQSVKLESQTASSESKLGEIKSL CCHHHHHHHHHHHEECCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHH IQAAIMDSPQPFSGSVILLEEGKPLLELQKGEGINQDSRFVMASLSKQITATLVLQALDA HHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC GKLDLNQTLNHYLFGDLEAESKALKATDAGANAGDLNPNRYDERITLHQLLNHTSGVASI CCCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHC GQANRFEPGSQFEYSNLGYSLLGQVLEKVNHQSFTEQLAQFAARYQLNGLSAELGSLEVI CCCCCCCCCCCCCHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE HAKVPSLAVGLQESELIAPAELVIDEALLPAGGLIASTATYAAFQQQLHAGKLLSPESYQ EECCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH RMTTAYIELPFLWPNMRYGYGIRINKDNDLVEYSHTGYVSGYMSMTLHYPEFNLDLVMLE HHEEEEEEEEEECCCCCCCEEEEECCCCCEEEECCCCEEEEEEEEEEECCCCCEEEEEEE NLSLNLNDRNRVFELHNQIRQIIRSQLLAKAFKA CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRLSVIGSLLSGLLLLPSANSVGESLETAIVPESAQGGQSVKLESQTASSESKLGEIKSL CCHHHHHHHHHHHEECCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHH IQAAIMDSPQPFSGSVILLEEGKPLLELQKGEGINQDSRFVMASLSKQITATLVLQALDA HHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC GKLDLNQTLNHYLFGDLEAESKALKATDAGANAGDLNPNRYDERITLHQLLNHTSGVASI CCCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHC GQANRFEPGSQFEYSNLGYSLLGQVLEKVNHQSFTEQLAQFAARYQLNGLSAELGSLEVI CCCCCCCCCCCCCHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE HAKVPSLAVGLQESELIAPAELVIDEALLPAGGLIASTATYAAFQQQLHAGKLLSPESYQ EECCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH RMTTAYIELPFLWPNMRYGYGIRINKDNDLVEYSHTGYVSGYMSMTLHYPEFNLDLVMLE HHEEEEEEEEEECCCCCCCEEEEECCCCCEEEECCCCEEEEEEEEEEECCCCCEEEEEEE NLSLNLNDRNRVFELHNQIRQIIRSQLLAKAFKA CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA