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The map label for this gene is csgD [C]

Identifier: 113969064

GI number: 113969064

Start: 839672

End: 840337

Strand: Direct

Name: csgD [C]

Synonym: Shewmr4_0720

Alternate gene names: 113969064

Gene position: 839672-840337 (Clockwise)

Preceding gene: 113969063

Following gene: 113969067

Centisome position: 17.84

GC content: 48.2

Gene sequence:

>666_bases
GTGAATACTATCAACGAGTTAGTTTTTCTGCATCAAGTGGCTGCGCCTTGCCATTTAGCGATACTCGCAGAATCTATCGG
ATTAAAAACACGGATTGTTAAACAGGCTTCCGAGCTAAATTTAGATAAAGGGCAACGCAGTTTTTGCCTTATCGCCCAAA
AAGGCGCTGCCTTAGATAATAAAGGCATTCCGCTGTTGGCCTCACGTCTGGTGCCCCATGTTCCCGTCGCTTTGTATCAA
GTCGAGCGTAATTCCTTAGACCAAGAGTCAGCCATGTTGCTGGGGATCCGCGGTCTGTTATTTGCGGATCAGCGGATGGA
TTTGATGCTAACGGGGCTGCGCAAAATGGTGGCCGATGAGCTTTGGTACGATAGAACCTTACTCAGTAAGATGTTTCGCC
GGGTGGTGCAAAAGTTGGATGGGCAAAATGATATGCCCGCCGATACCGTTGCCATGTTGCAAGCGCTTACCTCAAGGGAG
CGAACCATTATTCAGTTCGTCTCTAGCGGCGCGCGTAATAAGGAAATCGCCCATCGACTCTGCATCAGTGAACATACGGT
GAAGGCGCATATTTCCTCTATTTTCCGTAAGACCCAGTCCCGCAATCGTGTTGAGCTATTGCGTTGGGCTCAGACCTATC
AAACACATTTTGAGTTTTGCAGTTAA

Upstream 100 bases:

>100_bases
AGAATGGGCTATGTTAATTAATTGTACTTTGTGTACATTTGCCCTCTTCAGTTCAGCATTAGGTTATAAAAACTAAATAC
TTTTCAGGGAGAAGAGTAAA

Downstream 100 bases:

>100_bases
GCTCAAAGCTTAAGCCTTAAACGCACTAAGGTGAGTTGCGAGTGAACTGGGCGGTGATTTACGTCGGCAAGATAAGACGA
GCGGCAACTCACTTTTGTGC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LuxR Family; Transcriptional Regulator LuxR Family Protein; Two Component LuxR Family Transcriptional Regulator; CsgAB Operon Transcriptional Regulatory Protein; Regulatory Protein LuxR; Response Regulator Receiver Protein; Response Regulator Receiver Domain Protein; LuxR Family CSG Operon Transcriptional Regulator; Two-Component Response Regulator; Transcriptional Regulator; Response Regulator; Csg Operon Transcription Regulator Protein; Protein-Glutamate Methylesterase; Transcriptional Regulator VpsT; Nitrate/Nitrite Response Regulator

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MNTINELVFLHQVAAPCHLAILAESIGLKTRIVKQASELNLDKGQRSFCLIAQKGAALDNKGIPLLASRLVPHVPVALYQ
VERNSLDQESAMLLGIRGLLFADQRMDLMLTGLRKMVADELWYDRTLLSKMFRRVVQKLDGQNDMPADTVAMLQALTSRE
RTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWAQTYQTHFEFCS

Sequences:

>Translated_221_residues
MNTINELVFLHQVAAPCHLAILAESIGLKTRIVKQASELNLDKGQRSFCLIAQKGAALDNKGIPLLASRLVPHVPVALYQ
VERNSLDQESAMLLGIRGLLFADQRMDLMLTGLRKMVADELWYDRTLLSKMFRRVVQKLDGQNDMPADTVAMLQALTSRE
RTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWAQTYQTHFEFCS
>Mature_221_residues
MNTINELVFLHQVAAPCHLAILAESIGLKTRIVKQASELNLDKGQRSFCLIAQKGAALDNKGIPLLASRLVPHVPVALYQ
VERNSLDQESAMLLGIRGLLFADQRMDLMLTGLRKMVADELWYDRTLLSKMFRRVVQKLDGQNDMPADTVAMLQALTSRE
RTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWAQTYQTHFEFCS

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25072; Mature: 25072

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTINELVFLHQVAAPCHLAILAESIGLKTRIVKQASELNLDKGQRSFCLIAQKGAALDN
CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
KGIPLLASRLVPHVPVALYQVERNSLDQESAMLLGIRGLLFADQRMDLMLTGLRKMVADE
CCCHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWYDRTLLSKMFRRVVQKLDGQNDMPADTVAMLQALTSRERTIIQFVSSGARNKEIAHRL
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
CISEHTVKAHISSIFRKTQSRNRVELLRWAQTYQTHFEFCS
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNTINELVFLHQVAAPCHLAILAESIGLKTRIVKQASELNLDKGQRSFCLIAQKGAALDN
CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
KGIPLLASRLVPHVPVALYQVERNSLDQESAMLLGIRGLLFADQRMDLMLTGLRKMVADE
CCCHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWYDRTLLSKMFRRVVQKLDGQNDMPADTVAMLQALTSRERTIIQFVSSGARNKEIAHRL
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
CISEHTVKAHISSIFRKTQSRNRVELLRWAQTYQTHFEFCS
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA