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The map label for this gene is yjdF [H]

Identifier: 113969063

GI number: 113969063

Start: 838696

End: 839304

Strand: Direct

Name: yjdF [H]

Synonym: Shewmr4_0719

Alternate gene names: 113969063

Gene position: 838696-839304 (Clockwise)

Preceding gene: 113969060

Following gene: 113969064

Centisome position: 17.82

GC content: 48.6

Gene sequence:

>609_bases
TTGAATAACAAAATTGCTTGGTGCGGTATTTACCTCTCAGTTTTAATATGGTCGGCGATAAAACCCGCAGATCCATTCAC
TTGGTGGCTCGAAGCCTTGCCCGCATTAGTGGCCGTGCCCTTACTCTTTTTTACCCGCAAGCGTTTCCCGCTGACGCCCT
TAGTGTATTTTTTGGTACTGGTACATTGCTGTGTGTTGTTTGTTGGCGCGCACTATACCTACGCCGAAGTGCCGCTGTTT
GACACTATTGCCCAGTGGATGGGCAGCGAGCGCAATAACTACGACAAGGTTGGGCATTTTGCTCAAGGCTTTATTCCTGC
CATGCTAGCCCGTGAGATTATGTTACGTAATCAAGCTGTTAAGCCTGGTGCTTGGTGTGCCTTTTTAGTCACCTGCTTTG
TGTTGGCCTTTAGTGCCTTCTATGAACTGATTGAATGGTGGGTGGCCGCTGCAACTGGCGAAGGCGCCGAGGCCTTCTTA
GGCACTCAGGGTTATGTGTGGGACACGCAATCGGATATGTTTTTAGCCCTAATAGGTGCCATTGTCGCGTTAATCAGTTT
ATCGCGTGTTCAGGATAAGCAAATAGCCAAACTTGTCGGTCAAGCTTAA

Upstream 100 bases:

>100_bases
TGGACCTCCAAAGTAGCACTTTTTTTGCTCACTGTGGAGGGCTAGATGGCTAAAGTTAATATTCTAGAATTAGAACAATA
TCGCATAAGAGGAAGGAACA

Downstream 100 bases:

>100_bases
ACTCGAACCCTTATCGATAAATGCCCTCGAAGCTTCCATTCGAGGGGATTTTTTATTCCTCAAGTTGTCATCTTTTGCTG
TTAGTTTTTTGTTTAAACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MNNKIAWCGIYLSVLIWSAIKPADPFTWWLEALPALVAVPLLFFTRKRFPLTPLVYFLVLVHCCVLFVGAHYTYAEVPLF
DTIAQWMGSERNNYDKVGHFAQGFIPAMLAREIMLRNQAVKPGAWCAFLVTCFVLAFSAFYELIEWWVAAATGEGAEAFL
GTQGYVWDTQSDMFLALIGAIVALISLSRVQDKQIAKLVGQA

Sequences:

>Translated_202_residues
MNNKIAWCGIYLSVLIWSAIKPADPFTWWLEALPALVAVPLLFFTRKRFPLTPLVYFLVLVHCCVLFVGAHYTYAEVPLF
DTIAQWMGSERNNYDKVGHFAQGFIPAMLAREIMLRNQAVKPGAWCAFLVTCFVLAFSAFYELIEWWVAAATGEGAEAFL
GTQGYVWDTQSDMFLALIGAIVALISLSRVQDKQIAKLVGQA
>Mature_202_residues
MNNKIAWCGIYLSVLIWSAIKPADPFTWWLEALPALVAVPLLFFTRKRFPLTPLVYFLVLVHCCVLFVGAHYTYAEVPLF
DTIAQWMGSERNNYDKVGHFAQGFIPAMLAREIMLRNQAVKPGAWCAFLVTCFVLAFSAFYELIEWWVAAATGEGAEAFL
GTQGYVWDTQSDMFLALIGAIVALISLSRVQDKQIAKLVGQA

Specific function: Unknown

COG id: COG3647

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790562, Length=184, Percent_Identity=50.5434782608696, Blast_Score=202, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014509 [H]

Pfam domain/function: PF09997 DUF2238 [H]

EC number: NA

Molecular weight: Translated: 22636; Mature: 22636

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKIAWCGIYLSVLIWSAIKPADPFTWWLEALPALVAVPLLFFTRKRFPLTPLVYFLVL
CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
VHCCVLFVGAHYTYAEVPLFDTIAQWMGSERNNYDKVGHFAQGFIPAMLAREIMLRNQAV
HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
KPGAWCAFLVTCFVLAFSAFYELIEWWVAAATGEGAEAFLGTQGYVWDTQSDMFLALIGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEECCCCHHHHHHHHH
IVALISLSRVQDKQIAKLVGQA
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNNKIAWCGIYLSVLIWSAIKPADPFTWWLEALPALVAVPLLFFTRKRFPLTPLVYFLVL
CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
VHCCVLFVGAHYTYAEVPLFDTIAQWMGSERNNYDKVGHFAQGFIPAMLAREIMLRNQAV
HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
KPGAWCAFLVTCFVLAFSAFYELIEWWVAAATGEGAEAFLGTQGYVWDTQSDMFLALIGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEECCCCHHHHHHHHH
IVALISLSRVQDKQIAKLVGQA
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2656658 [H]