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The map label for this gene is orn [H]

Identifier: 113968935

GI number: 113968935

Start: 682802

End: 683347

Strand: Direct

Name: orn [H]

Synonym: Shewmr4_0591

Alternate gene names: 113968935

Gene position: 682802-683347 (Clockwise)

Preceding gene: 113968929

Following gene: 113968936

Centisome position: 14.51

GC content: 47.25

Gene sequence:

>546_bases
ATGGCGGCGGACGCGAATAATCTGATTTGGATCGATCTCGAAATGACAGGGTTAGAGCCCGATGTCGACAGGGTCATTGA
AATTGCTACCTTAGTAACAGACCAAGAACTCAATATTATCGGTCAGGGGCCTGTTATTGCTATTCATCAATCGGATGAAG
TGCTGGCGGCCATGGATGATTGGAACCAGAAACACCACGGTGAATCGGGTCTGATCGATAGAGTGCGTGCTAGCCAAGTG
AATGAAGCTCAGGCCGTTGCACAAACCATCGCATTTTTAGAGCAATATGTGCCTAAGGGCGCATCGCCTATGTGTGGCAA
CAGTGTGGGCCAGGACCGTCGCTTCTTAAATCGTTATATGCGTGAACTGGAGGATTACTTCCATTATCGCAATCTCGACG
TTAGCACGGTAAAAGAGTTAGTGAAGCGTTGGAGCCCTGAAACCATGGCGGGTTTCAAAAAGCAAAATACCCACCAAGCG
CTGCAAGATATCCAAGAGTCGATCGCGGAATTACAGTATTACCGCAGCAAAGTATTTAAAATTTGA

Upstream 100 bases:

>100_bases
GTCAATTAGATGATTTTTTGTGTCTGAAAAAAGCAGTATGATACACGCTCTTGAATAAAAAAGCCTGAATTTAGGCTAAC
TGACATGATAAGGCGCAATT

Downstream 100 bases:

>100_bases
CCGATCAGCAGATAAATCTGCAAGAAGGGGTTGCAGCCGCATAAATTTTTCATATAATGCGGCCTCAACTTTTTGATGCG
GACACGAAGCGCTGCTCATA

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MAADANNLIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDEVLAAMDDWNQKHHGESGLIDRVRASQV
NEAQAVAQTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELEDYFHYRNLDVSTVKELVKRWSPETMAGFKKQNTHQA
LQDIQESIAELQYYRSKVFKI

Sequences:

>Translated_181_residues
MAADANNLIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDEVLAAMDDWNQKHHGESGLIDRVRASQV
NEAQAVAQTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELEDYFHYRNLDVSTVKELVKRWSPETMAGFKKQNTHQA
LQDIQESIAELQYYRSKVFKI
>Mature_180_residues
AADANNLIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDEVLAAMDDWNQKHHGESGLIDRVRASQVN
EAQAVAQTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELEDYFHYRNLDVSTVKELVKRWSPETMAGFKKQNTHQAL
QDIQESIAELQYYRSKVFKI

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=176, Percent_Identity=47.7272727272727, Blast_Score=185, Evalue=2e-47,
Organism=Escherichia coli, GI87082382, Length=181, Percent_Identity=64.0883977900553, Blast_Score=257, Evalue=4e-70,
Organism=Caenorhabditis elegans, GI17557752, Length=172, Percent_Identity=47.6744186046512, Blast_Score=165, Evalue=1e-41,
Organism=Saccharomyces cerevisiae, GI6323088, Length=182, Percent_Identity=39.5604395604396, Blast_Score=125, Evalue=4e-30,
Organism=Drosophila melanogaster, GI21355135, Length=175, Percent_Identity=46.8571428571429, Blast_Score=184, Evalue=3e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 20651; Mature: 20519

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAADANNLIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDEVLAAMDD
CCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCHHHHHHH
WNQKHHGESGLIDRVRASQVNEAQAVAQTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYM
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
RELEDYFHYRNLDVSTVKELVKRWSPETMAGFKKQNTHQALQDIQESIAELQYYRSKVFK
HHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC
I
C
>Mature Secondary Structure 
AADANNLIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDEVLAAMDD
CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCHHHHHHH
WNQKHHGESGLIDRVRASQVNEAQAVAQTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYM
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
RELEDYFHYRNLDVSTVKELVKRWSPETMAGFKKQNTHQALQDIQESIAELQYYRSKVFK
HHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA