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The map label for this gene is ydhJ [C]

Identifier: 113968861

GI number: 113968861

Start: 595325

End: 596617

Strand: Direct

Name: ydhJ [C]

Synonym: Shewmr4_0517

Alternate gene names: 113968861

Gene position: 595325-596617 (Clockwise)

Preceding gene: 113968860

Following gene: 113968862

Centisome position: 12.65

GC content: 55.07

Gene sequence:

>1293_bases
ATGAATTCAATCACTCAGAAATCTATTTTCCATTCTTTTTCTACTGTGTCTGCTACGGGCTTAAGGTCGTTGTTTACTCC
TTCCCGCTTAGCGCTGGCGCTGATGCTTACCTCGTTAACTATTACGGCCCCCACCTTCGCGGGTGAAGGCCATGACCACG
GCGCTGAAAAGGTGGCCAATACCGCTGAAAAGAGCGTAAGTGCAACAGAAGATGACCATGGTGAGCAGGCACTCACTCTG
ACGCCTGCGCAGTTGGAACTTGCAGGGATCCGCCTCTTACCCCTGAGCAGTGACAGCTTAAGCCTAAGCAATCTCAATCT
CGATACTATGGCGACCGCCACTCTAGTGGTCGACCGTGATAGAACCGCCACTTTGGCACCACAGCTGGATGTGCGTGTGC
AGGCGCGCCATGTTGTGCCCGGTCAAGAGGTGAAAAAAGGTGAGCCCTTACTGACCTTAGGTGGGGCAGAAGTCGCCAAG
GCGCAGGCCGAATATATCAATGCCGCCGCTGAGTGGAACCGTGTGCGCCGCATGAGTGAAAGCGCCGTGAGCGTGAGCCG
CAGAATGCAGGCGCAGGTCGATGCCGAACTCAAGCGAGCGATTCTGGAGGCGATCAAAATGACGGCGGAACAAATACGCA
CCTTAGAGTCGACCCCAGAAGCTATCGGCAGCTATCAGTTACTGGCGCCTATCGATGGCCGTGTGCAGCAGGATATCGCC
ATGCTAGGTCAAGTGTTCACCGCTGGCACACCATTAATGCAGTTGACCGATGAGTCGCATCTTTGGGTTGAAGCGCAATT
AACCCCAGCACAGGCGGCCAATGTGAATGCCGGCGGCCCGGCGTTAGTGCAGGTCGGGGATAAAACCTTGGCGGGCAAGA
TTATCGGCCGTTCCCATGAGCTGGATAGCGTGACGCGCACCGAGCAGATTTTAGTCAGCATGCCAAACCCTGAGCATGTG
TTGCACGCGGGACAATTTGCCGAGCTTTACTTTGCCGATGCGCCTGCAAGTGCAGACGGAGCCGCTTCCTCATCGGGCTT
CTCATCTGGAATCGTCCTGCCCGATGCGGCGCTAACACGTGGCGGTGATGGTGATTGGCAGATTTTTGTTCAAGACGAAG
ATGGTTTTGAAGCCATAGAGGTGGAGCTGGTTCAGCGTCAACGTGGCTTAAGCCTAGTACGCGGGGATGAGTTGGATAAG
GCGCGGCAGGCACAACAGAAAGTGGTGATTGAGGGGGCGTTTTTCTTGGCATCGGAGCAGGCCAAAGCTGGCTTTGATAT
TCATGCCCACTAA

Upstream 100 bases:

>100_bases
AGCGGTCAGCTGCTGTCCGTGATCGACAATTTAGCCGACAAATCAGCGTCCATTTCTTCTACAAATGCCGTGCCAGCAGA
GTAAATCGTGAGGTAACACT

Downstream 100 bases:

>100_bases
TGGTTGTGCTGATATGAAAGCTGTTTAGTGAACCCTTATCAAGCCCTATTTTGATAACTTTTTTAAAGGCTTAGGGCTAG
CGCGCGAGGAATTTTTATGT

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: RND Family Efflux Transporter MFP Subunit; Efflux Transporter RND Family MFP Subunit; Cation Efflux Protein; Cation Efflux System Protein; RND Family Transporter Membrane-Fusion Protein; Metal Transporter-Like Exported Protein; Heavy Metal Resistance Protein Czcb; Chemiosmotic Efflux System B Protein B; Heavy Metal Efflux Pump Czcb Family; Secretion Protein HlyD Family Protein; Cobalt-Zinc-Cadmium Resistance Protein CzcB; Membrane-Fusion Protein-Like; Copper/Silver Efflux System Membrane Fusion Protein; Secretion Protein Putative RND Family Efflux Protein

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MNSITQKSIFHSFSTVSATGLRSLFTPSRLALALMLTSLTITAPTFAGEGHDHGAEKVANTAEKSVSATEDDHGEQALTL
TPAQLELAGIRLLPLSSDSLSLSNLNLDTMATATLVVDRDRTATLAPQLDVRVQARHVVPGQEVKKGEPLLTLGGAEVAK
AQAEYINAAAEWNRVRRMSESAVSVSRRMQAQVDAELKRAILEAIKMTAEQIRTLESTPEAIGSYQLLAPIDGRVQQDIA
MLGQVFTAGTPLMQLTDESHLWVEAQLTPAQAANVNAGGPALVQVGDKTLAGKIIGRSHELDSVTRTEQILVSMPNPEHV
LHAGQFAELYFADAPASADGAASSSGFSSGIVLPDAALTRGGDGDWQIFVQDEDGFEAIEVELVQRQRGLSLVRGDELDK
ARQAQQKVVIEGAFFLASEQAKAGFDIHAH

Sequences:

>Translated_430_residues
MNSITQKSIFHSFSTVSATGLRSLFTPSRLALALMLTSLTITAPTFAGEGHDHGAEKVANTAEKSVSATEDDHGEQALTL
TPAQLELAGIRLLPLSSDSLSLSNLNLDTMATATLVVDRDRTATLAPQLDVRVQARHVVPGQEVKKGEPLLTLGGAEVAK
AQAEYINAAAEWNRVRRMSESAVSVSRRMQAQVDAELKRAILEAIKMTAEQIRTLESTPEAIGSYQLLAPIDGRVQQDIA
MLGQVFTAGTPLMQLTDESHLWVEAQLTPAQAANVNAGGPALVQVGDKTLAGKIIGRSHELDSVTRTEQILVSMPNPEHV
LHAGQFAELYFADAPASADGAASSSGFSSGIVLPDAALTRGGDGDWQIFVQDEDGFEAIEVELVQRQRGLSLVRGDELDK
ARQAQQKVVIEGAFFLASEQAKAGFDIHAH
>Mature_430_residues
MNSITQKSIFHSFSTVSATGLRSLFTPSRLALALMLTSLTITAPTFAGEGHDHGAEKVANTAEKSVSATEDDHGEQALTL
TPAQLELAGIRLLPLSSDSLSLSNLNLDTMATATLVVDRDRTATLAPQLDVRVQARHVVPGQEVKKGEPLLTLGGAEVAK
AQAEYINAAAEWNRVRRMSESAVSVSRRMQAQVDAELKRAILEAIKMTAEQIRTLESTPEAIGSYQLLAPIDGRVQQDIA
MLGQVFTAGTPLMQLTDESHLWVEAQLTPAQAANVNAGGPALVQVGDKTLAGKIIGRSHELDSVTRTEQILVSMPNPEHV
LHAGQFAELYFADAPASADGAASSSGFSSGIVLPDAALTRGGDGDWQIFVQDEDGFEAIEVELVQRQRGLSLVRGDELDK
ARQAQQKVVIEGAFFLASEQAKAGFDIHAH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45885; Mature: 45885

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSITQKSIFHSFSTVSATGLRSLFTPSRLALALMLTSLTITAPTFAGEGHDHGAEKVAN
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHH
TAEKSVSATEDDHGEQALTLTPAQLELAGIRLLPLSSDSLSLSNLNLDTMATATLVVDRD
HHHHHCCCCCCCCCCEEEEECCCEEEEEEEEEEECCCCCCEEECCCCHHHEEEEEEEECC
RTATLAPQLDVRVQARHVVPGQEVKKGEPLLTLGGAEVAKAQAEYINAAAEWNRVRRMSE
CCEEECCCCCEEEEEEECCCCHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
SAVSVSRRMQAQVDAELKRAILEAIKMTAEQIRTLESTPEAIGSYQLLAPIDGRVQQDIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEEECCCCHHHHHHH
MLGQVFTAGTPLMQLTDESHLWVEAQLTPAQAANVNAGGPALVQVGDKTLAGKIIGRSHE
HHHHHHHCCCCCEEECCCCCEEEEEEECCHHHCCCCCCCCEEEEECCCCHHHHHHCCCCC
LDSVTRTEQILVSMPNPEHVLHAGQFAELYFADAPASADGAASSSGFSSGIVLPDAALTR
CHHHHCCEEEEEECCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCEECCCHHHCC
GGDGDWQIFVQDEDGFEAIEVELVQRQRGLSLVRGDELDKARQAQQKVVIEGAFFLASEQ
CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHEEEEEEEEEECCC
AKAGFDIHAH
CCCCCEEECC
>Mature Secondary Structure
MNSITQKSIFHSFSTVSATGLRSLFTPSRLALALMLTSLTITAPTFAGEGHDHGAEKVAN
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHH
TAEKSVSATEDDHGEQALTLTPAQLELAGIRLLPLSSDSLSLSNLNLDTMATATLVVDRD
HHHHHCCCCCCCCCCEEEEECCCEEEEEEEEEEECCCCCCEEECCCCHHHEEEEEEEECC
RTATLAPQLDVRVQARHVVPGQEVKKGEPLLTLGGAEVAKAQAEYINAAAEWNRVRRMSE
CCEEECCCCCEEEEEEECCCCHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
SAVSVSRRMQAQVDAELKRAILEAIKMTAEQIRTLESTPEAIGSYQLLAPIDGRVQQDIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEEECCCCHHHHHHH
MLGQVFTAGTPLMQLTDESHLWVEAQLTPAQAANVNAGGPALVQVGDKTLAGKIIGRSHE
HHHHHHHCCCCCEEECCCCCEEEEEEECCHHHCCCCCCCCEEEEECCCCHHHHHHCCCCC
LDSVTRTEQILVSMPNPEHVLHAGQFAELYFADAPASADGAASSSGFSSGIVLPDAALTR
CHHHHCCEEEEEECCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCEECCCHHHCC
GGDGDWQIFVQDEDGFEAIEVELVQRQRGLSLVRGDELDKARQAQQKVVIEGAFFLASEQ
CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHEEEEEEEEEECCC
AKAGFDIHAH
CCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA